Wall clock time and date at job start Mon Mar 30 2020 02:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46979 * 2 1 4 4 C 1.50699 * 109.47353 * 119.99539 * 2 1 3 5 5 H 1.08003 * 120.00305 * 120.00062 * 4 2 1 6 6 C 1.37885 * 119.99829 * 300.00511 * 4 2 1 7 7 N 1.31515 * 119.99955 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99813 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46979 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46947 * 120.00130 * 8 6 4 11 11 H 1.48496 * 109.46902 * 240.00098 * 8 6 4 12 12 N 1.46898 * 109.47578 * 239.99631 * 2 1 3 13 13 C 1.47482 * 111.00078 * 165.96703 * 12 2 1 14 14 C 1.53512 * 87.93172 * 221.29958 * 13 12 2 15 15 C 1.47484 * 110.99770 * 69.99742 * 12 2 1 16 16 H 1.09002 * 113.47602 * 253.47118 * 15 12 2 17 17 C 1.52996 * 113.47606 * 23.87855 * 15 12 2 18 18 H 1.09001 * 109.46977 * 60.00400 * 1 2 3 19 19 H 1.08998 * 109.46674 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47351 * 300.00324 * 1 2 3 21 21 H 0.97001 * 119.99658 * 180.02562 * 7 6 4 22 22 H 1.08996 * 113.47361 * 336.06478 * 13 12 2 23 23 H 1.09002 * 113.47118 * 106.53352 * 13 12 2 24 24 H 1.08998 * 114.17143 * 272.37855 * 14 13 12 25 25 H 1.08995 * 114.16980 * 139.67468 * 14 13 12 26 26 H 1.08999 * 109.47480 * 58.89522 * 17 15 12 27 27 H 1.08999 * 109.47571 * 178.89591 * 17 15 12 28 28 H 1.09006 * 109.47479 * 298.89382 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8304 2.6033 8 14 2.3214 -1.1200 4.0081 9 1 3.1466 -2.2866 3.6040 10 1 3.1465 -0.1870 4.8166 11 1 1.1661 -1.5864 4.8161 12 7 2.0198 -0.6925 -1.1993 13 6 3.4553 -0.4299 -1.4121 14 6 3.1509 -0.2908 -2.9103 15 6 1.7519 0.1002 -2.4138 16 1 0.9454 -0.3027 -3.0263 17 6 1.5968 1.5979 -2.1421 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 0.7094 1.1620 3.4843 22 1 3.8003 0.4957 -0.9514 23 1 4.0923 -1.2822 -1.1758 24 1 3.1823 -1.2308 -3.4613 25 1 3.6919 0.5173 -3.4025 26 1 2.5065 1.9792 -1.6783 27 1 1.4212 2.1214 -3.0819 28 1 0.7521 1.7602 -1.4726 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681179.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:21 Heat of formation + Delta-G solvation = 13.278353 kcal Electronic energy + Delta-G solvation = -10240.126741 eV Core-core repulsion = 8484.428376 eV Total energy + Delta-G solvation = -1755.698365 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24573 -35.61914 -32.48272 -30.63854 -27.52423 -27.16945 -24.86801 -22.20674 -19.31666 -18.45308 -17.08258 -16.68061 -15.99634 -15.53902 -14.52716 -13.91376 -13.43830 -13.31552 -13.14103 -12.90940 -12.65801 -12.52800 -12.22891 -12.13313 -11.84104 -11.28068 -11.05057 -10.85665 -10.52891 -9.34936 -8.13518 -6.25180 1.37949 1.39560 1.51839 2.40500 3.14020 3.44821 3.67785 4.09960 4.42924 4.49926 4.56131 4.78145 4.80679 4.84258 4.98229 5.02129 5.06947 5.12961 5.27402 5.43689 5.51684 5.54857 5.71993 6.12415 6.31001 6.64470 6.88731 7.43561 8.92248 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069262 B = 0.015567 C = 0.013869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.166206 B = 1798.248310 C = 2018.478451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.181 3.819 3 H -0.005 1.005 4 C -0.522 4.522 5 H 0.047 0.953 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.278 1.278 12 N -0.491 5.491 13 C 0.005 3.995 14 C -0.121 4.121 15 C 0.014 3.986 16 H 0.087 0.913 17 C -0.156 4.156 18 H 0.034 0.966 19 H 0.021 0.979 20 H 0.059 0.941 21 H 0.262 0.738 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 0.199 -7.858 8.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 H 0.012 0.988 4 C -0.561 4.561 5 H 0.065 0.935 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.203 1.203 11 H -0.204 1.204 12 N -0.214 5.214 13 C -0.124 4.124 14 C -0.158 4.158 15 C -0.095 4.095 16 H 0.105 0.895 17 C -0.214 4.214 18 H 0.053 0.947 19 H 0.041 0.959 20 H 0.078 0.922 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.085 0.915 24 H 0.118 0.882 25 H 0.109 0.891 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.425 -0.376 -7.612 7.998 hybrid contribution 0.322 0.526 1.261 1.404 sum 2.747 0.150 -6.351 6.922 Atomic orbital electron populations 1.21664 0.97789 0.98709 0.99859 1.19579 0.92745 0.92019 0.88356 0.98758 1.21404 1.30989 1.12149 0.91558 0.93519 1.25709 0.95403 0.95830 1.01844 1.70012 1.37755 1.24087 1.23984 0.85487 0.78184 0.78593 0.79255 1.19586 1.20323 1.20411 1.69012 1.06258 1.43359 1.02723 1.23484 0.92557 0.99735 0.96627 1.23156 0.95127 1.02761 0.94759 1.23240 0.99026 0.93139 0.94139 0.89475 1.22049 1.01470 0.95603 1.02253 0.94716 0.95943 0.92230 0.92891 0.93395 0.91456 0.88208 0.89060 0.93747 0.89710 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.24 8.59 71.98 0.62 -5.62 15 2 C 0.18 9.47 1.28 44.17 0.06 9.52 15 3 H -0.01 -0.28 5.68 -2.38 -0.01 -0.30 15 4 C -0.52 -30.18 8.40 25.60 0.22 -29.97 15 5 H 0.05 2.74 7.81 -2.91 -0.02 2.72 15 6 C 0.01 0.61 5.30 84.66 0.45 1.06 15 7 N -0.92 -53.85 11.32 21.45 0.24 -53.61 15 8 Si 0.96 44.96 29.54 68.60 2.03 46.99 15 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 12 N -0.49 -22.03 6.12 -881.22 -5.39 -27.42 15 13 C 0.01 0.21 6.97 83.58 0.58 0.79 15 14 C -0.12 -3.57 8.05 30.94 0.25 -3.32 15 15 C 0.01 0.50 4.12 42.19 0.17 0.67 15 16 H 0.09 2.90 8.14 -2.39 -0.02 2.88 15 17 C -0.16 -5.34 7.99 71.98 0.58 -4.76 15 18 H 0.03 1.55 5.95 -2.39 -0.01 1.54 15 19 H 0.02 1.13 8.14 -2.39 -0.02 1.11 15 20 H 0.06 3.32 6.07 -2.39 -0.01 3.31 15 21 H 0.26 14.51 8.31 -92.71 -0.77 13.74 15 22 H 0.05 1.99 6.92 -2.39 -0.02 1.97 15 23 H 0.07 2.59 8.14 -2.39 -0.02 2.57 15 24 H 0.10 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.09 2.22 8.11 -2.39 -0.02 2.20 15 26 H 0.04 1.59 6.63 -2.39 -0.02 1.58 15 27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 28 H 0.05 1.98 5.17 -2.38 -0.01 1.96 15 Total: -1.00 -62.18 220.36 0.92 -61.26 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.12 Total: 4.41 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 2.92 Total: -31.62 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -5.15 Total: -81.03 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -62.18 0.92 -61.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681179.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.536 kcal (2) G-P(sol) polarization free energy of solvation -62.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds