Wall clock time and date at job start Mon Mar 30 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47135 * 2 1 4 4 C 1.50693 * 109.47495 * 120.00160 * 2 1 3 5 5 H 1.07998 * 120.00077 * 119.99899 * 4 2 1 6 6 C 1.37882 * 119.99960 * 299.99915 * 4 2 1 7 7 N 1.31520 * 119.99760 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 120.00072 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47408 * 89.99732 * 8 6 4 10 10 H 1.48498 * 109.47137 * 210.00003 * 8 6 4 11 11 H 1.48506 * 109.47184 * 330.00045 * 8 6 4 12 12 N 1.46901 * 109.47237 * 240.00428 * 2 1 3 13 13 C 1.47959 * 111.00444 * 172.77808 * 12 2 1 14 14 C 1.53931 * 86.18138 * 222.41495 * 13 12 2 15 15 C 1.53002 * 113.73510 * 138.07527 * 14 13 12 16 16 C 1.47960 * 110.99979 * 73.41515 * 12 2 1 17 17 H 1.08995 * 109.46922 * 65.97856 * 1 2 3 18 18 H 1.09002 * 109.46678 * 185.98131 * 1 2 3 19 19 H 1.08998 * 109.46847 * 305.97798 * 1 2 3 20 20 H 0.96997 * 119.99596 * 180.02562 * 7 6 4 21 21 H 1.09000 * 113.76070 * 108.09436 * 13 12 2 22 22 H 1.09001 * 113.85625 * 336.74900 * 13 12 2 23 23 H 1.09001 * 113.73703 * 269.35934 * 14 13 12 24 24 H 1.09006 * 109.46783 * 59.99698 * 15 14 13 25 25 H 1.08992 * 109.47604 * 179.97438 * 15 14 13 26 26 H 1.08999 * 109.47115 * 300.00583 * 15 14 13 27 27 H 1.08996 * 113.75988 * 23.27188 * 16 12 2 28 28 H 1.09003 * 113.76124 * 251.89913 * 16 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2393 2.4827 7 7 2.1375 -0.8597 3.5565 8 14 0.6261 1.2798 2.6542 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9952 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 3.4884 -0.5636 -1.3237 14 6 3.2366 -0.3146 -2.8217 15 6 4.0945 0.8062 -3.4124 16 6 1.8247 0.1385 -2.4081 17 1 -0.3633 0.4183 -0.9386 18 1 -0.3633 -1.0221 0.1071 19 1 -0.3633 0.6037 0.8316 20 1 1.9029 -0.5285 4.4375 21 1 4.0293 -1.4871 -1.1169 22 1 3.9014 0.2977 -0.7986 23 1 3.2469 -1.2222 -3.4252 24 1 5.1491 0.5550 -3.2983 25 1 3.8616 0.9227 -4.4708 26 1 3.8845 1.7389 -2.8889 27 1 1.7494 1.2057 -2.1999 28 1 1.0364 -0.2240 -3.0678 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681189.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:06 Heat of formation + Delta-G solvation = 31.832504 kcal Electronic energy + Delta-G solvation = -10069.923398 eV Core-core repulsion = 8315.029601 eV Total energy + Delta-G solvation = -1754.893797 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.27614 -33.84776 -31.52105 -29.22599 -26.02008 -24.43144 -24.00406 -19.63719 -18.98310 -16.72462 -15.29788 -15.06579 -14.14463 -13.59726 -13.19045 -12.44716 -12.26598 -12.10989 -11.89536 -11.84823 -11.05849 -10.84102 -10.35271 -10.15309 -9.96468 -9.89660 -9.31211 -9.03580 -8.55826 -7.79087 -6.06299 -4.04682 3.27095 3.35636 3.38291 4.40241 4.78192 4.91698 5.23667 5.25900 5.69480 5.84886 5.95181 6.02684 6.12253 6.21484 6.27996 6.31948 6.43772 6.50553 6.63367 6.74647 6.83256 7.08690 7.42534 7.81481 8.00131 8.63526 9.00931 9.55969 11.07025 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.066704 B = 0.015069 C = 0.014006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.666117 B = 1857.732099 C = 1998.613378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.149 3.851 3 H 0.003 0.997 4 C -0.504 4.504 5 H 0.079 0.921 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.466 5.466 13 C 0.027 3.973 14 C -0.128 4.128 15 C -0.141 4.141 16 C -0.001 4.001 17 H 0.028 0.972 18 H 0.060 0.940 19 H 0.038 0.962 20 H 0.264 0.736 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.090 0.910 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.583 4.051 -10.473 11.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.040 3.960 3 H 0.020 0.980 4 C -0.542 4.542 5 H 0.097 0.903 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.189 5.189 13 C -0.102 4.102 14 C -0.147 4.147 15 C -0.199 4.199 16 C -0.131 4.131 17 H 0.047 0.953 18 H 0.079 0.921 19 H 0.057 0.943 20 H 0.074 0.926 21 H 0.095 0.905 22 H 0.084 0.916 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.264 3.402 -10.192 10.748 hybrid contribution -0.398 1.645 0.406 1.740 sum -0.134 5.047 -9.786 11.011 Atomic orbital electron populations 1.22066 0.98446 1.01347 0.98013 1.20220 0.92052 0.93022 0.90674 0.97964 1.20917 1.31819 1.13542 0.87966 0.90252 1.24936 0.95821 0.96666 0.95804 1.69891 1.45787 1.40317 0.97854 0.86856 0.80853 0.83790 0.76686 1.20510 1.22430 1.19566 1.68434 1.06940 1.41547 1.01952 1.23639 0.92216 1.01359 0.92953 1.23050 0.95684 0.98739 0.97231 1.21743 0.99701 0.98298 1.00174 1.23933 0.96740 0.96866 0.95539 0.95287 0.92130 0.94335 0.92645 0.90465 0.91582 0.89139 0.92609 0.93043 0.92867 0.92350 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.76 37.16 0.33 -2.93 15 2 C 0.15 3.68 1.24 -68.87 -0.09 3.59 15 3 H 0.00 0.07 6.75 -51.93 -0.35 -0.28 15 4 C -0.50 -14.59 8.79 -34.44 -0.30 -14.90 15 5 H 0.08 2.51 7.95 -52.49 -0.42 2.09 15 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 15 7 N -0.90 -27.96 13.96 55.43 0.77 -27.18 15 8 Si 0.89 22.43 24.31 -169.99 -4.13 18.30 15 9 H -0.28 -6.86 6.92 56.52 0.39 -6.47 15 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 15 11 H -0.27 -6.58 6.53 56.52 0.37 -6.21 15 12 N -0.47 -10.17 5.97 -231.69 -1.38 -11.55 15 13 C 0.03 0.53 6.86 -2.77 -0.02 0.51 15 14 C -0.13 -2.00 4.54 -89.69 -0.41 -2.41 15 15 C -0.14 -1.82 9.73 37.16 0.36 -1.46 15 16 C 0.00 -0.03 6.72 -2.76 -0.02 -0.04 15 17 H 0.03 0.57 7.50 -51.93 -0.39 0.19 15 18 H 0.06 1.41 8.14 -51.93 -0.42 0.99 15 19 H 0.04 0.90 3.45 -51.93 -0.18 0.72 15 20 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 21 H 0.08 1.50 8.14 -51.93 -0.42 1.08 15 22 H 0.07 1.34 7.80 -51.93 -0.40 0.93 15 23 H 0.09 1.33 8.14 -51.93 -0.42 0.90 15 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 26 H 0.05 0.70 7.94 -51.93 -0.41 0.29 15 27 H 0.06 1.02 7.55 -51.93 -0.39 0.63 15 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 LS Contribution 222.97 15.07 3.36 3.36 Total: -1.00 -30.57 222.97 -5.88 -36.45 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -4.26 Total: -3.69 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -0.24 Total: -15.68 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: -0.61 Total: -38.74 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.13 Total: 18.30 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.57 -5.88 -36.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681189.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.283 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds