Wall clock time and date at job start Mon Mar 30 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47135 * 2 1 4 4 C 1.50693 * 109.47495 * 120.00160 * 2 1 3 5 5 H 1.07998 * 120.00077 * 119.99899 * 4 2 1 6 6 C 1.37882 * 119.99960 * 299.99915 * 4 2 1 7 7 N 1.31520 * 119.99760 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 120.00072 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47408 * 89.99732 * 8 6 4 10 10 H 1.48498 * 109.47137 * 210.00003 * 8 6 4 11 11 H 1.48506 * 109.47184 * 330.00045 * 8 6 4 12 12 N 1.46901 * 109.47237 * 240.00428 * 2 1 3 13 13 C 1.47959 * 111.00444 * 172.77808 * 12 2 1 14 14 C 1.53931 * 86.18138 * 222.41495 * 13 12 2 15 15 C 1.53002 * 113.73510 * 138.07527 * 14 13 12 16 16 C 1.47960 * 110.99979 * 73.41515 * 12 2 1 17 17 H 1.08995 * 109.46922 * 65.97856 * 1 2 3 18 18 H 1.09002 * 109.46678 * 185.98131 * 1 2 3 19 19 H 1.08998 * 109.46847 * 305.97798 * 1 2 3 20 20 H 0.96997 * 119.99596 * 180.02562 * 7 6 4 21 21 H 1.09000 * 113.76070 * 108.09436 * 13 12 2 22 22 H 1.09001 * 113.85625 * 336.74900 * 13 12 2 23 23 H 1.09001 * 113.73703 * 269.35934 * 14 13 12 24 24 H 1.09006 * 109.46783 * 59.99698 * 15 14 13 25 25 H 1.08992 * 109.47604 * 179.97438 * 15 14 13 26 26 H 1.08999 * 109.47115 * 300.00583 * 15 14 13 27 27 H 1.08996 * 113.75988 * 23.27188 * 16 12 2 28 28 H 1.09003 * 113.76124 * 251.89913 * 16 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2393 2.4827 7 7 2.1375 -0.8597 3.5565 8 14 0.6261 1.2798 2.6542 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9952 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 3.4884 -0.5636 -1.3237 14 6 3.2366 -0.3146 -2.8217 15 6 4.0945 0.8062 -3.4124 16 6 1.8247 0.1385 -2.4081 17 1 -0.3633 0.4183 -0.9386 18 1 -0.3633 -1.0221 0.1071 19 1 -0.3633 0.6037 0.8316 20 1 1.9029 -0.5285 4.4375 21 1 4.0293 -1.4871 -1.1169 22 1 3.9014 0.2977 -0.7986 23 1 3.2469 -1.2222 -3.4252 24 1 5.1491 0.5550 -3.2983 25 1 3.8616 0.9227 -4.4708 26 1 3.8845 1.7389 -2.8889 27 1 1.7494 1.2057 -2.1999 28 1 1.0364 -0.2240 -3.0678 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681189.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:06 Heat of formation + Delta-G solvation = 8.882302 kcal Electronic energy + Delta-G solvation = -10070.918593 eV Core-core repulsion = 8315.029601 eV Total energy + Delta-G solvation = -1755.888992 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.81770 -35.78448 -33.51038 -30.67960 -27.80128 -26.19820 -25.58467 -21.48281 -20.37879 -18.86580 -17.13817 -16.62155 -15.84705 -15.22337 -14.99953 -14.31394 -13.91363 -13.58961 -13.46211 -13.20470 -12.77497 -12.44411 -12.29800 -11.91290 -11.64091 -11.35540 -11.15015 -10.97541 -10.75035 -9.46509 -8.33095 -6.36944 1.27175 1.31198 1.42057 2.28072 3.00559 3.27302 3.58761 3.94144 4.41556 4.43252 4.54535 4.61957 4.64859 4.72529 4.82326 4.85437 4.94231 4.97698 5.06761 5.26215 5.32173 5.49298 5.61378 5.80328 6.09676 6.59361 6.68346 7.28146 8.84163 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.066704 B = 0.015069 C = 0.014006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.666117 B = 1857.732099 C = 1998.613378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.152 3.848 3 H -0.002 1.002 4 C -0.511 4.511 5 H 0.032 0.968 6 C 0.011 3.989 7 N -0.948 5.948 8 Si 0.953 3.047 9 H -0.264 1.264 10 H -0.294 1.294 11 H -0.251 1.251 12 N -0.493 5.493 13 C 0.015 3.985 14 C -0.104 4.104 15 C -0.137 4.137 16 C 0.000 4.000 17 H 0.063 0.937 18 H 0.049 0.951 19 H 0.035 0.965 20 H 0.267 0.733 21 H 0.064 0.936 22 H 0.052 0.948 23 H 0.105 0.895 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 5.676 -12.493 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.043 3.957 3 H 0.016 0.984 4 C -0.549 4.549 5 H 0.050 0.950 6 C -0.186 4.186 7 N -0.589 5.589 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.222 1.222 11 H -0.176 1.176 12 N -0.216 5.216 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.194 4.194 16 C -0.129 4.129 17 H 0.082 0.918 18 H 0.068 0.932 19 H 0.054 0.946 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.123 0.877 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.700 5.024 -12.243 13.253 hybrid contribution -0.014 1.032 1.008 1.443 sum -0.713 6.057 -11.235 12.784 Atomic orbital electron populations 1.21974 0.96812 1.00973 0.99747 1.20067 0.93272 0.92147 0.90195 0.98432 1.21155 1.31064 1.12318 0.90380 0.94966 1.25838 0.97379 1.00184 0.95248 1.70045 1.47703 1.42548 0.98589 0.85788 0.79273 0.79732 0.77244 1.18991 1.22198 1.17565 1.68387 1.08199 1.42703 1.02270 1.23697 0.91025 1.00260 0.96474 1.22934 0.94680 1.00268 0.94411 1.21714 0.99591 0.96699 1.01404 1.24057 0.98645 0.96653 0.93505 0.91809 0.93215 0.94619 0.92419 0.91783 0.92950 0.87730 0.91743 0.90445 0.93314 0.91832 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.03 8.76 71.98 0.63 -5.40 15 2 C 0.15 7.40 1.24 44.17 0.05 7.46 15 3 H 0.00 -0.09 6.75 -2.38 -0.02 -0.11 15 4 C -0.51 -30.36 8.79 25.60 0.23 -30.13 15 5 H 0.03 2.15 7.95 -2.91 -0.02 2.13 15 6 C 0.01 0.64 5.45 84.66 0.46 1.10 15 7 N -0.95 -60.62 13.96 21.45 0.30 -60.32 15 8 Si 0.95 45.81 24.31 68.60 1.67 47.48 15 9 H -0.26 -12.04 6.92 99.48 0.69 -11.36 15 10 H -0.29 -13.95 7.11 99.48 0.71 -13.25 15 11 H -0.25 -11.24 6.53 99.48 0.65 -10.59 15 12 N -0.49 -21.06 5.97 -886.92 -5.29 -26.35 15 13 C 0.01 0.57 6.86 86.40 0.59 1.16 15 14 C -0.10 -2.97 4.54 -10.15 -0.05 -3.02 15 15 C -0.14 -3.03 9.73 71.98 0.70 -2.33 15 16 C 0.00 0.00 6.72 86.41 0.58 0.58 15 17 H 0.06 2.32 7.50 -2.39 -0.02 2.30 15 18 H 0.05 2.25 8.14 -2.39 -0.02 2.23 15 19 H 0.04 1.56 3.45 -2.39 -0.01 1.56 15 20 H 0.27 15.89 8.31 -92.71 -0.77 15.12 15 21 H 0.06 2.57 8.14 -2.39 -0.02 2.55 15 22 H 0.05 2.15 7.80 -2.39 -0.02 2.13 15 23 H 0.10 2.72 8.14 -2.39 -0.02 2.70 15 24 H 0.06 1.34 8.14 -2.38 -0.02 1.32 15 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 15 26 H 0.05 1.13 7.94 -2.39 -0.02 1.11 15 27 H 0.06 2.00 7.55 -2.39 -0.02 1.98 15 28 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 Total: -1.00 -66.87 222.97 0.91 -65.96 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.04 Total: 3.81 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 3.20 Total: -30.58 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -4.99 Total: -86.67 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.67 Total: 47.48 kcal Total: -66.87 0.91 -65.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681189.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.843 kcal (2) G-P(sol) polarization free energy of solvation -66.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds