Wall clock time and date at job start Mon Mar 30 2020 02:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 112.78531 * 2 1 4 4 C 1.53514 * 113.47714 * 229.19406 * 2 1 3 5 5 C 1.53513 * 83.57604 * 219.20590 * 4 2 1 6 6 N 1.47480 * 87.93170 * 26.02495 * 5 4 2 7 7 C 1.46901 * 111.00171 * 221.29782 * 6 5 4 8 8 C 1.53000 * 109.46769 * 265.97194 * 7 6 5 9 9 C 1.50706 * 109.46735 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99928 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99611 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00327 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46828 * 90.00241 * 13 11 9 15 15 H 1.48494 * 109.47178 * 209.99936 * 13 11 9 16 16 H 1.48500 * 109.47075 * 330.00183 * 13 11 9 17 17 H 1.08997 * 109.47290 * 289.18495 * 1 2 3 18 18 H 1.09001 * 109.47548 * 49.19097 * 1 2 3 19 19 H 1.09006 * 109.47059 * 169.18460 * 1 2 3 20 20 H 1.08999 * 114.17273 * 332.85186 * 4 2 1 21 21 H 1.09008 * 114.16783 * 105.37171 * 4 2 1 22 22 H 1.08999 * 113.47967 * 271.25770 * 5 4 2 23 23 H 1.08994 * 113.47798 * 140.78998 * 5 4 2 24 24 H 1.09002 * 109.47401 * 145.96902 * 7 6 5 25 25 H 1.09001 * 109.46874 * 25.96914 * 7 6 5 26 26 H 1.09001 * 109.47194 * 299.99524 * 8 7 6 27 27 H 1.08992 * 109.47399 * 59.99697 * 8 7 6 28 28 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9521 1.0050 0.0000 4 6 2.1415 -0.9202 -1.0658 5 6 3.1573 -1.2394 0.0401 6 7 2.1176 -0.8841 1.0238 7 6 2.6851 -0.1030 2.1309 8 6 3.0575 -1.0426 3.2796 9 6 3.6392 -0.2412 4.4156 10 1 3.7341 0.8309 4.3269 11 6 4.0500 -0.8768 5.5681 12 7 3.9339 -2.1823 5.6762 13 14 4.7717 0.1165 6.9760 14 1 3.6826 0.5385 7.8931 15 1 5.7498 -0.7174 7.7197 16 1 5.4562 1.3178 6.4343 17 1 -0.3634 0.3377 0.9705 18 1 -0.3634 0.6716 -0.7778 19 1 -0.3633 -1.0095 -0.1928 20 1 1.5078 -1.7615 -1.3460 21 1 2.5611 -0.3932 -1.9228 22 1 4.0138 -0.5652 0.0508 23 1 3.4465 -2.2897 0.0741 24 1 1.9494 0.6222 2.4786 25 1 3.5768 0.4207 1.7863 26 1 2.1658 -1.5664 3.6241 27 1 3.7932 -1.7677 2.9319 28 1 4.2226 -2.6295 6.4871 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681298.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:18 Heat of formation + Delta-G solvation = 19.398112 kcal Electronic energy + Delta-G solvation = -9677.734487 eV Core-core repulsion = 7922.301495 eV Total energy + Delta-G solvation = -1755.432992 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.64334 -33.49742 -31.27978 -29.55210 -27.24074 -23.71435 -22.91832 -20.40013 -19.23992 -16.39362 -15.26036 -14.76125 -14.52575 -14.18915 -13.06795 -12.84549 -12.27044 -11.81344 -11.47401 -11.34821 -11.04156 -10.88026 -10.78619 -10.41160 -10.11885 -9.68240 -9.33234 -9.04769 -8.31785 -8.21686 -5.96168 -3.99106 3.33762 3.39550 3.42818 4.41681 4.56573 4.77297 5.13039 5.39292 5.55290 5.66067 5.69887 5.79538 5.93020 6.11729 6.13340 6.18368 6.33426 6.36689 6.57038 6.91993 7.12993 7.57751 7.80207 7.93584 8.12511 8.46551 9.08559 9.64397 11.15215 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.091087 B = 0.009823 C = 0.009549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.324678 B = 2849.659146 C = 2931.462318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.017 3.983 3 H 0.069 0.931 4 C -0.145 4.145 5 C 0.001 3.999 6 N -0.467 5.467 7 C 0.028 3.972 8 C 0.034 3.966 9 C -0.523 4.523 10 H 0.053 0.947 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 H 0.056 0.944 18 H 0.051 0.949 19 H 0.059 0.941 20 H 0.088 0.912 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.023 0.977 27 H 0.015 0.985 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 3.596 -10.568 11.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.093 4.093 3 H 0.087 0.913 4 C -0.183 4.183 5 C -0.128 4.128 6 N -0.190 5.190 7 C -0.100 4.100 8 C -0.004 4.004 9 C -0.562 4.562 10 H 0.071 0.929 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.199 1.199 17 H 0.075 0.925 18 H 0.070 0.930 19 H 0.078 0.922 20 H 0.107 0.893 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.033 0.967 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.528 2.945 -10.075 11.074 hybrid contribution 1.007 1.193 0.671 1.700 sum -2.520 4.138 -9.404 10.579 Atomic orbital electron populations 1.21592 0.94186 1.01695 1.01343 1.23341 0.96478 0.96141 0.93348 0.91300 1.23251 0.98940 0.99913 0.96155 1.23692 0.94575 1.02284 0.92270 1.68990 1.18295 1.28356 1.03369 1.22865 0.96718 0.96886 0.93520 1.18952 0.96782 0.94137 0.90519 1.21230 1.41103 0.93699 1.00197 0.92870 1.25004 0.95960 0.94866 0.98502 1.69980 1.47743 1.07956 1.27561 0.86594 0.78977 0.80004 0.82410 1.20634 1.21200 1.19944 0.92475 0.92976 0.92218 0.89343 0.91527 0.91773 0.90178 0.92438 0.95173 0.95883 0.96684 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.99 37.16 0.37 -1.42 15 2 C 0.02 0.26 3.69 -71.43 -0.26 -0.01 15 3 H 0.07 1.04 7.91 -51.93 -0.41 0.63 15 4 C -0.14 -1.96 8.00 -26.20 -0.21 -2.17 15 5 C 0.00 0.02 7.71 -7.54 -0.06 -0.04 15 6 N -0.47 -9.10 6.12 -236.48 -1.45 -10.55 15 7 C 0.03 0.62 4.76 -3.82 -0.02 0.60 15 8 C 0.03 0.92 5.30 -27.88 -0.15 0.78 15 9 C -0.52 -15.36 9.11 -34.44 -0.31 -15.68 15 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 15 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 12 N -0.89 -27.66 13.29 55.43 0.74 -26.92 15 13 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 15 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 17 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 18 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 19 H 0.06 0.81 7.97 -51.93 -0.41 0.39 15 20 H 0.09 1.13 8.00 -51.93 -0.42 0.72 15 21 H 0.07 0.76 8.14 -51.92 -0.42 0.33 15 22 H 0.06 1.05 7.42 -51.93 -0.39 0.66 15 23 H 0.08 1.33 8.14 -51.93 -0.42 0.91 15 24 H 0.06 1.27 8.08 -51.93 -0.42 0.85 15 25 H 0.03 0.65 7.30 -51.93 -0.38 0.28 15 26 H 0.02 0.68 8.14 -51.93 -0.42 0.26 15 27 H 0.01 0.43 8.14 -51.93 -0.42 0.01 15 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 LS Contribution 235.86 15.07 3.55 3.55 Total: -1.00 -31.05 235.86 -7.42 -38.47 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -4.50 Total: -5.29 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -0.74 Total: -16.32 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.71 Total: -37.48 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.05 -7.42 -38.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681298.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.866 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds