Wall clock time and date at job start Mon Mar 30 2020 02:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 112.78531 * 2 1 4 4 C 1.53514 * 113.47714 * 229.19406 * 2 1 3 5 5 C 1.53513 * 83.57604 * 219.20590 * 4 2 1 6 6 N 1.47480 * 87.93170 * 26.02495 * 5 4 2 7 7 C 1.46901 * 111.00171 * 221.29782 * 6 5 4 8 8 C 1.53000 * 109.46769 * 265.97194 * 7 6 5 9 9 C 1.50706 * 109.46735 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99928 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99611 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00327 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46828 * 90.00241 * 13 11 9 15 15 H 1.48494 * 109.47178 * 209.99936 * 13 11 9 16 16 H 1.48500 * 109.47075 * 330.00183 * 13 11 9 17 17 H 1.08997 * 109.47290 * 289.18495 * 1 2 3 18 18 H 1.09001 * 109.47548 * 49.19097 * 1 2 3 19 19 H 1.09006 * 109.47059 * 169.18460 * 1 2 3 20 20 H 1.08999 * 114.17273 * 332.85186 * 4 2 1 21 21 H 1.09008 * 114.16783 * 105.37171 * 4 2 1 22 22 H 1.08999 * 113.47967 * 271.25770 * 5 4 2 23 23 H 1.08994 * 113.47798 * 140.78998 * 5 4 2 24 24 H 1.09002 * 109.47401 * 145.96902 * 7 6 5 25 25 H 1.09001 * 109.46874 * 25.96914 * 7 6 5 26 26 H 1.09001 * 109.47194 * 299.99524 * 8 7 6 27 27 H 1.08992 * 109.47399 * 59.99697 * 8 7 6 28 28 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9521 1.0050 0.0000 4 6 2.1415 -0.9202 -1.0658 5 6 3.1573 -1.2394 0.0401 6 7 2.1176 -0.8841 1.0238 7 6 2.6851 -0.1030 2.1309 8 6 3.0575 -1.0426 3.2796 9 6 3.6392 -0.2412 4.4156 10 1 3.7341 0.8309 4.3269 11 6 4.0500 -0.8768 5.5681 12 7 3.9339 -2.1823 5.6762 13 14 4.7717 0.1165 6.9760 14 1 3.6826 0.5385 7.8931 15 1 5.7498 -0.7174 7.7197 16 1 5.4562 1.3178 6.4343 17 1 -0.3634 0.3377 0.9705 18 1 -0.3634 0.6716 -0.7778 19 1 -0.3633 -1.0095 -0.1928 20 1 1.5078 -1.7615 -1.3460 21 1 2.5611 -0.3932 -1.9228 22 1 4.0138 -0.5652 0.0508 23 1 3.4465 -2.2897 0.0741 24 1 1.9494 0.6222 2.4786 25 1 3.5768 0.4207 1.7863 26 1 2.1658 -1.5664 3.6241 27 1 3.7932 -1.7677 2.9319 28 1 4.2226 -2.6295 6.4871 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681298.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:18 Heat of formation + Delta-G solvation = -2.459478 kcal Electronic energy + Delta-G solvation = -9678.682303 eV Core-core repulsion = 7922.301495 eV Total energy + Delta-G solvation = -1756.380809 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.00037 -35.63224 -33.17882 -30.82204 -29.02571 -25.69644 -24.14314 -22.33846 -20.49194 -18.57828 -16.75985 -16.55277 -16.24454 -15.60541 -14.61650 -14.35485 -14.10467 -13.55263 -13.04589 -12.78600 -12.63949 -12.54967 -12.38392 -12.11248 -11.68524 -11.43207 -11.20678 -11.04375 -10.58637 -9.71006 -8.22575 -6.35802 1.38301 1.40878 1.51926 2.38592 3.10107 3.17223 3.57239 3.93150 4.20492 4.39223 4.45127 4.50219 4.56966 4.81041 4.83491 5.00681 5.00869 5.03585 5.18488 5.37853 5.44451 5.47676 5.77190 5.78256 6.15388 6.32286 6.81494 7.34006 8.89871 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.091087 B = 0.009823 C = 0.009549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.324678 B = 2849.659146 C = 2931.462318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.013 3.987 3 H 0.076 0.924 4 C -0.119 4.119 5 C -0.010 4.010 6 N -0.499 5.499 7 C 0.045 3.955 8 C 0.042 3.958 9 C -0.549 4.549 10 H 0.061 0.939 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.972 3.028 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.261 1.261 17 H 0.040 0.960 18 H 0.083 0.917 19 H 0.058 0.942 20 H 0.097 0.903 21 H 0.099 0.901 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.035 0.965 26 H -0.013 1.013 27 H -0.015 1.015 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 5.027 -11.360 12.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.096 4.096 3 H 0.094 0.906 4 C -0.157 4.157 5 C -0.139 4.139 6 N -0.222 5.222 7 C -0.083 4.083 8 C 0.004 3.996 9 C -0.587 4.587 10 H 0.079 0.921 11 C -0.199 4.199 12 N -0.574 5.574 13 Si 0.795 3.205 14 H -0.196 1.196 15 H -0.205 1.205 16 H -0.186 1.186 17 H 0.059 0.941 18 H 0.101 0.899 19 H 0.077 0.923 20 H 0.116 0.884 21 H 0.117 0.883 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.005 0.995 27 H 0.004 0.996 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.477 4.383 -10.890 12.243 hybrid contribution 0.967 0.695 0.876 1.479 sum -2.510 5.079 -10.014 11.505 Atomic orbital electron populations 1.21601 0.92927 1.02440 1.01580 1.23506 0.97524 0.96292 0.92272 0.90561 1.23172 0.97058 0.99649 0.95772 1.23817 0.95067 1.01883 0.93122 1.68950 1.19670 1.29506 1.04083 1.22503 0.96965 0.95678 0.93136 1.18781 0.94211 0.94224 0.92364 1.21659 1.41585 0.94305 1.01197 0.92077 1.26047 0.96090 0.96042 1.01674 1.70126 1.48556 1.10003 1.28665 0.85356 0.78298 0.78507 0.78312 1.19599 1.20523 1.18556 0.94070 0.89867 0.92281 0.88428 0.88307 0.91526 0.91055 0.92547 0.94691 0.99455 0.99630 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.99 71.98 0.72 -2.51 15 2 C 0.01 0.38 3.69 42.19 0.16 0.53 15 3 H 0.08 2.10 7.91 -2.39 -0.02 2.08 15 4 C -0.12 -2.86 8.00 30.94 0.25 -2.61 15 5 C -0.01 -0.32 7.71 83.58 0.64 0.32 15 6 N -0.50 -19.34 6.12 -902.10 -5.52 -24.87 15 7 C 0.05 2.06 4.76 86.30 0.41 2.47 15 8 C 0.04 2.38 5.30 29.85 0.16 2.54 15 9 C -0.55 -32.73 9.11 25.60 0.23 -32.50 15 10 H 0.06 3.46 7.74 -2.91 -0.02 3.43 15 11 C 0.00 -0.04 5.46 84.66 0.46 0.42 15 12 N -0.93 -59.03 13.29 21.45 0.28 -58.74 15 13 Si 0.97 45.25 29.54 68.60 2.03 47.27 15 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 16 H -0.26 -11.54 7.11 99.48 0.71 -10.84 15 17 H 0.04 1.16 8.14 -2.39 -0.02 1.14 15 18 H 0.08 1.58 8.14 -2.39 -0.02 1.56 15 19 H 0.06 1.48 7.97 -2.38 -0.02 1.46 15 20 H 0.10 2.20 8.00 -2.39 -0.02 2.18 15 21 H 0.10 1.81 8.14 -2.38 -0.02 1.79 15 22 H 0.07 2.11 7.42 -2.39 -0.02 2.10 15 23 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.06 2.51 8.08 -2.39 -0.02 2.49 15 25 H 0.03 1.52 7.30 -2.39 -0.02 1.50 15 26 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 15 27 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 15 28 H 0.26 15.58 8.31 -92.71 -0.77 14.81 15 Total: -1.00 -67.67 235.86 0.92 -66.75 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: 1.10 Total: 0.92 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.03 Total: -31.33 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -5.24 Total: -83.61 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.67 0.92 -66.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681298.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.288 kcal (2) G-P(sol) polarization free energy of solvation -67.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds