Wall clock time and date at job start Mon Mar 30 2020 02:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 112.78627 * 2 1 4 4 C 1.53513 * 113.47700 * 130.80954 * 2 1 3 5 5 C 1.53509 * 83.57914 * 140.79259 * 4 2 1 6 6 N 1.47474 * 113.48128 * 229.18846 * 2 1 3 7 7 C 1.46898 * 111.00176 * 106.52621 * 6 2 1 8 8 C 1.53002 * 109.47585 * 187.49786 * 7 6 2 9 9 C 1.50696 * 109.46997 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 H 1.09010 * 109.47227 * 190.80577 * 1 2 3 18 18 H 1.09000 * 109.47957 * 310.80604 * 1 2 3 19 19 H 1.09002 * 109.47430 * 70.81352 * 1 2 3 20 20 H 1.09003 * 114.17102 * 27.14591 * 4 2 1 21 21 H 1.09002 * 114.17288 * 254.44177 * 4 2 1 22 22 H 1.08997 * 113.47781 * 219.21391 * 5 4 2 23 23 H 1.09001 * 113.47524 * 88.74143 * 5 4 2 24 24 H 1.09005 * 109.46746 * 67.50168 * 7 6 2 25 25 H 1.09002 * 109.47495 * 307.50288 * 7 6 2 26 26 H 1.09005 * 109.46767 * 60.00394 * 8 7 6 27 27 H 1.09002 * 109.47113 * 300.00734 * 8 7 6 28 28 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9521 1.0049 0.0000 4 6 2.1415 -0.9202 1.0657 5 6 3.1573 -1.2394 -0.0401 6 7 2.1176 -0.8840 -1.0237 7 6 2.6851 -0.1030 -2.1309 8 6 3.1150 -1.0484 -3.2544 9 6 3.6978 -0.2471 -4.3898 10 1 3.7562 0.8289 -4.3172 11 6 4.1565 -0.8876 -5.5214 12 7 4.6655 -0.1883 -6.5121 13 14 4.0547 -2.7486 -5.6472 14 1 5.2990 -3.3502 -5.1040 15 1 2.8883 -3.2345 -4.8670 16 1 3.8960 -3.1404 -7.0708 17 1 -0.3634 -1.0095 0.1927 18 1 -0.3635 0.6715 0.7778 19 1 -0.3634 0.3377 -0.9706 20 1 1.5077 -1.7616 1.3459 21 1 2.5640 -0.3933 1.9213 22 1 3.4464 -2.2898 -0.0741 23 1 4.0137 -0.5652 -0.0507 24 1 3.5509 0.4556 -1.7750 25 1 1.9345 0.5917 -2.5078 26 1 2.2492 -1.6070 -3.6103 27 1 3.8657 -1.7431 -2.8774 28 1 4.9886 -0.6390 -7.3080 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681300.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:19 Heat of formation + Delta-G solvation = 22.393320 kcal Electronic energy + Delta-G solvation = -9721.046632 eV Core-core repulsion = 7965.743521 eV Total energy + Delta-G solvation = -1755.303110 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.75503 -33.53261 -31.49846 -29.68811 -27.67997 -23.61183 -23.01198 -20.23379 -19.32394 -16.85088 -15.36105 -14.86214 -14.57351 -13.97607 -13.22996 -12.97704 -12.61447 -11.90149 -11.64016 -11.50390 -11.17209 -11.08228 -10.80494 -10.22042 -9.86600 -9.75283 -9.54734 -9.17861 -8.50554 -8.36789 -6.02108 -4.00126 3.34683 3.41653 3.49399 4.38988 4.49391 4.68419 5.04959 5.32781 5.48491 5.57284 5.59842 5.71546 5.84746 6.03350 6.04674 6.08082 6.20853 6.26564 6.48155 6.75552 6.92032 7.24115 7.47417 7.67604 7.86723 8.55563 9.01694 9.60832 11.11314 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.075297 B = 0.011114 C = 0.010652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.769789 B = 2518.741201 C = 2628.072006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.018 3.982 3 H 0.072 0.928 4 C -0.144 4.144 5 C -0.001 4.001 6 N -0.472 5.472 7 C 0.036 3.964 8 C -0.002 4.002 9 C -0.522 4.522 10 H 0.070 0.930 11 C 0.067 3.933 12 N -0.905 5.905 13 Si 0.881 3.119 14 H -0.278 1.278 15 H -0.263 1.263 16 H -0.288 1.288 17 H 0.058 0.942 18 H 0.053 0.947 19 H 0.057 0.943 20 H 0.088 0.912 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.036 0.964 25 H 0.064 0.936 26 H 0.023 0.977 27 H 0.010 0.990 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.109 -1.639 13.110 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 H 0.090 0.910 4 C -0.182 4.182 5 C -0.130 4.130 6 N -0.195 5.195 7 C -0.092 4.092 8 C -0.040 4.040 9 C -0.561 4.561 10 H 0.088 0.912 11 C -0.134 4.134 12 N -0.544 5.544 13 Si 0.708 3.292 14 H -0.204 1.204 15 H -0.187 1.187 16 H -0.214 1.214 17 H 0.077 0.923 18 H 0.072 0.928 19 H 0.076 0.924 20 H 0.107 0.893 21 H 0.086 0.914 22 H 0.097 0.903 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.028 0.972 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.431 -2.156 12.557 13.850 hybrid contribution 0.654 -0.192 -0.049 0.683 sum -4.777 -2.347 12.508 13.593 Atomic orbital electron populations 1.21598 0.94099 1.01702 1.01466 1.23331 0.96519 0.96232 0.93050 0.91046 1.23249 0.98829 0.99913 0.96222 1.23713 0.94720 1.02239 0.92355 1.68956 1.18366 1.28622 1.03572 1.22658 0.97402 0.96410 0.92746 1.19433 0.96194 0.95258 0.93083 1.21125 1.39988 0.95242 0.99728 0.91211 1.25001 0.94557 0.98347 0.95485 1.69921 1.41859 1.35776 1.06866 0.86750 0.79181 0.86175 0.77089 1.20354 1.18744 1.21408 0.92258 0.92846 0.92419 0.89325 0.91383 0.90260 0.91532 0.94608 0.91744 0.95873 0.97209 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.99 37.16 0.37 -1.33 15 2 C 0.02 0.27 3.70 -71.43 -0.26 0.00 15 3 H 0.07 1.03 7.91 -51.93 -0.41 0.62 15 4 C -0.14 -1.83 8.00 -26.20 -0.21 -2.04 15 5 C 0.00 -0.02 7.70 -7.54 -0.06 -0.08 15 6 N -0.47 -8.66 6.12 -236.50 -1.45 -10.11 15 7 C 0.04 0.76 4.71 -3.82 -0.02 0.74 15 8 C 0.00 -0.05 4.36 -27.88 -0.12 -0.17 15 9 C -0.52 -15.44 9.66 -34.44 -0.33 -15.78 15 10 H 0.07 2.19 7.99 -52.49 -0.42 1.77 15 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 12 N -0.91 -28.55 13.96 55.43 0.77 -27.78 15 13 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 15 14 H -0.28 -6.95 7.11 56.52 0.40 -6.54 15 15 H -0.26 -6.58 6.54 56.52 0.37 -6.21 15 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 17 H 0.06 0.75 7.97 -51.92 -0.41 0.34 15 18 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 19 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.09 1.06 8.00 -51.93 -0.42 0.64 15 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.07 1.03 7.44 -51.93 -0.39 0.64 15 24 H 0.04 0.75 7.35 -51.93 -0.38 0.37 15 25 H 0.06 1.38 8.11 -51.93 -0.42 0.96 15 26 H 0.02 0.60 7.20 -51.93 -0.37 0.23 15 27 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 15 28 H 0.26 7.74 8.31 -40.82 -0.34 7.40 15 LS Contribution 232.32 15.07 3.50 3.50 Total: -1.00 -31.34 232.32 -7.05 -38.38 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -4.47 Total: -5.14 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -0.73 Total: -16.72 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.67 Total: -37.88 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.34 -7.05 -38.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681300.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.775 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds