Wall clock time and date at job start Mon Mar 30 2020 02:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 112.78627 * 2 1 4 4 C 1.53513 * 113.47700 * 130.80954 * 2 1 3 5 5 C 1.53509 * 83.57914 * 140.79259 * 4 2 1 6 6 N 1.47474 * 113.48128 * 229.18846 * 2 1 3 7 7 C 1.46898 * 111.00176 * 106.52621 * 6 2 1 8 8 C 1.53002 * 109.47585 * 187.49786 * 7 6 2 9 9 C 1.50696 * 109.46997 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 H 1.09010 * 109.47227 * 190.80577 * 1 2 3 18 18 H 1.09000 * 109.47957 * 310.80604 * 1 2 3 19 19 H 1.09002 * 109.47430 * 70.81352 * 1 2 3 20 20 H 1.09003 * 114.17102 * 27.14591 * 4 2 1 21 21 H 1.09002 * 114.17288 * 254.44177 * 4 2 1 22 22 H 1.08997 * 113.47781 * 219.21391 * 5 4 2 23 23 H 1.09001 * 113.47524 * 88.74143 * 5 4 2 24 24 H 1.09005 * 109.46746 * 67.50168 * 7 6 2 25 25 H 1.09002 * 109.47495 * 307.50288 * 7 6 2 26 26 H 1.09005 * 109.46767 * 60.00394 * 8 7 6 27 27 H 1.09002 * 109.47113 * 300.00734 * 8 7 6 28 28 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9521 1.0049 0.0000 4 6 2.1415 -0.9202 1.0657 5 6 3.1573 -1.2394 -0.0401 6 7 2.1176 -0.8840 -1.0237 7 6 2.6851 -0.1030 -2.1309 8 6 3.1150 -1.0484 -3.2544 9 6 3.6978 -0.2471 -4.3898 10 1 3.7562 0.8289 -4.3172 11 6 4.1565 -0.8876 -5.5214 12 7 4.6655 -0.1883 -6.5121 13 14 4.0547 -2.7486 -5.6472 14 1 5.2990 -3.3502 -5.1040 15 1 2.8883 -3.2345 -4.8670 16 1 3.8960 -3.1404 -7.0708 17 1 -0.3634 -1.0095 0.1927 18 1 -0.3635 0.6715 0.7778 19 1 -0.3634 0.3377 -0.9706 20 1 1.5077 -1.7616 1.3459 21 1 2.5640 -0.3933 1.9213 22 1 3.4464 -2.2898 -0.0741 23 1 4.0137 -0.5652 -0.0507 24 1 3.5509 0.4556 -1.7750 25 1 1.9345 0.5917 -2.5078 26 1 2.2492 -1.6070 -3.6103 27 1 3.8657 -1.7431 -2.8774 28 1 4.9886 -0.6390 -7.3080 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681300.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:19 Heat of formation + Delta-G solvation = -0.166277 kcal Electronic energy + Delta-G solvation = -9722.024889 eV Core-core repulsion = 7965.743521 eV Total energy + Delta-G solvation = -1756.281368 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.02221 -35.60973 -33.45033 -30.88915 -29.34678 -25.47625 -24.14928 -22.14518 -20.49908 -19.03097 -16.77827 -16.41114 -16.28609 -15.55076 -14.88362 -14.56678 -14.18012 -13.65097 -13.17574 -12.81205 -12.56952 -12.53278 -12.41043 -11.85125 -11.65548 -11.47414 -11.26237 -11.16048 -10.79985 -9.76314 -8.34020 -6.38776 1.32883 1.35323 1.49227 2.33670 3.01247 3.12555 3.57060 3.92474 4.16206 4.37790 4.42650 4.47395 4.55173 4.78855 4.82654 4.93115 4.98789 5.01981 5.17557 5.27142 5.35363 5.41294 5.60098 5.67310 6.19107 6.26223 6.68202 7.26556 8.82741 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.075297 B = 0.011114 C = 0.010652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.769789 B = 2518.741201 C = 2628.072006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.012 3.988 3 H 0.072 0.928 4 C -0.120 4.120 5 C -0.012 4.012 6 N -0.494 5.494 7 C 0.048 3.952 8 C 0.006 3.994 9 C -0.538 4.538 10 H 0.032 0.968 11 C 0.008 3.992 12 N -0.949 5.949 13 Si 0.953 3.047 14 H -0.264 1.264 15 H -0.253 1.253 16 H -0.279 1.279 17 H 0.062 0.938 18 H 0.080 0.920 19 H 0.040 0.960 20 H 0.101 0.899 21 H 0.095 0.905 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.032 0.968 25 H 0.054 0.946 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.713 -3.087 14.891 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.097 4.097 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.140 4.140 6 N -0.217 5.217 7 C -0.080 4.080 8 C -0.032 4.032 9 C -0.576 4.576 10 H 0.050 0.950 11 C -0.189 4.189 12 N -0.589 5.589 13 Si 0.776 3.224 14 H -0.189 1.189 15 H -0.177 1.177 16 H -0.205 1.205 17 H 0.081 0.919 18 H 0.098 0.902 19 H 0.059 0.941 20 H 0.119 0.881 21 H 0.114 0.886 22 H 0.099 0.901 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.041 -3.595 14.360 15.988 hybrid contribution 0.845 0.354 -0.588 1.089 sum -5.197 -3.241 13.771 15.072 Atomic orbital electron populations 1.21600 0.92840 1.02572 1.01545 1.23502 0.97582 0.96258 0.92396 0.90968 1.23180 0.97141 0.99639 0.95758 1.23850 0.94972 1.02316 0.92907 1.68932 1.19535 1.29243 1.03960 1.22359 0.97073 0.95547 0.93065 1.19293 0.95521 0.95363 0.93025 1.21443 1.40448 0.94097 1.01620 0.94956 1.25982 0.93953 1.04086 0.94914 1.70060 1.42943 1.38231 1.07712 0.85617 0.79930 0.79214 0.77650 1.18916 1.17679 1.20462 0.91911 0.90155 0.94061 0.88090 0.88628 0.90105 0.91682 0.94988 0.92785 0.96539 0.96901 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.99 71.98 0.72 -2.29 15 2 C 0.01 0.32 3.70 42.19 0.16 0.47 15 3 H 0.07 1.95 7.91 -2.39 -0.02 1.93 15 4 C -0.12 -2.60 8.00 30.94 0.25 -2.36 15 5 C -0.01 -0.33 7.70 83.58 0.64 0.31 15 6 N -0.49 -17.39 6.12 -902.14 -5.52 -22.91 15 7 C 0.05 2.05 4.71 86.30 0.41 2.46 15 8 C 0.01 0.29 4.36 29.85 0.13 0.42 15 9 C -0.54 -32.55 9.66 25.60 0.25 -32.30 15 10 H 0.03 2.12 7.99 -2.91 -0.02 2.10 15 11 C 0.01 0.47 5.47 84.66 0.46 0.93 15 12 N -0.95 -60.95 13.96 21.45 0.30 -60.65 15 13 Si 0.95 46.23 27.47 68.60 1.88 48.12 15 14 H -0.26 -12.20 7.11 99.48 0.71 -11.50 15 15 H -0.25 -11.78 6.54 99.48 0.65 -11.13 15 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 15 17 H 0.06 1.42 7.97 -2.38 -0.02 1.40 15 18 H 0.08 1.45 8.14 -2.39 -0.02 1.43 15 19 H 0.04 1.09 8.14 -2.39 -0.02 1.07 15 20 H 0.10 1.99 8.00 -2.39 -0.02 1.97 15 21 H 0.10 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 23 H 0.06 1.91 7.44 -2.39 -0.02 1.89 15 24 H 0.03 1.36 7.35 -2.38 -0.02 1.34 15 25 H 0.05 2.37 8.11 -2.39 -0.02 2.35 15 26 H 0.02 0.85 7.20 -2.38 -0.02 0.83 15 27 H 0.01 0.63 7.57 -2.39 -0.02 0.62 15 28 H 0.27 15.95 8.31 -92.71 -0.77 15.18 15 Total: -1.00 -67.52 232.32 0.72 -66.80 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 1.05 Total: 0.99 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 3.01 Total: -32.35 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -5.22 Total: -83.56 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.12 kcal Total: -67.52 0.72 -66.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681300.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.630 kcal (2) G-P(sol) polarization free energy of solvation -67.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds