Wall clock time and date at job start Mon Mar 30 2020 01:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53524 * 114.16927 * 2 1 4 4 N 1.47480 * 87.93064 * 87.81055 * 3 2 1 5 5 C 1.46896 * 110.99824 * 138.70002 * 4 3 2 6 6 C 1.52996 * 109.47256 * 169.99800 * 5 4 3 7 7 C 1.50702 * 109.47159 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72211 * 7 6 5 10 10 N 1.31514 * 119.99985 * 180.27663 * 9 7 6 11 11 Si 1.86800 * 119.99777 * 0.28166 * 9 7 6 12 12 H 1.48498 * 109.47109 * 89.99834 * 11 9 7 13 13 H 1.48507 * 109.46754 * 209.99574 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99405 * 11 9 7 15 15 C 1.47485 * 87.83616 * 27.01016 * 4 3 2 16 16 H 1.09001 * 109.46957 * 59.99928 * 1 2 3 17 17 H 1.08994 * 109.46547 * 180.02562 * 1 2 3 18 18 H 1.09001 * 109.46878 * 300.00234 * 1 2 3 19 19 H 1.08998 * 113.25611 * 227.04881 * 2 1 3 20 20 H 1.09001 * 113.47237 * 333.04381 * 3 2 1 21 21 H 1.08999 * 113.47150 * 202.58073 * 3 2 1 22 22 H 1.09004 * 109.46774 * 50.00000 * 5 4 3 23 23 H 1.09000 * 109.47723 * 290.00388 * 5 4 3 24 24 H 1.09004 * 109.47066 * 60.00378 * 6 5 4 25 25 H 1.08994 * 109.47405 * 300.00209 * 6 5 4 26 26 H 0.96996 * 119.99730 * 180.02562 * 10 9 7 27 27 H 1.09004 * 113.47596 * 87.75586 * 15 4 3 28 28 H 1.08999 * 113.47128 * 218.21852 * 15 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1586 1.4007 0.0000 4 7 2.0855 1.3751 1.4728 5 6 3.3048 1.9356 2.0702 6 6 3.0959 2.1237 3.5741 7 6 4.3466 2.6993 4.1869 8 1 5.2046 2.9104 3.5657 9 6 4.3935 2.9625 5.5396 10 7 5.4831 3.4699 6.0734 11 14 2.9094 2.5980 6.6139 12 1 3.0029 1.2099 7.1329 13 1 2.8766 3.5510 7.7524 14 1 1.6690 2.7437 5.8105 15 6 2.1628 -0.0956 1.3953 16 1 -0.3633 0.5139 -0.8900 17 1 -0.3632 -1.0276 0.0005 18 1 -0.3633 0.5139 0.8900 19 1 1.9604 -0.6823 -0.7330 20 1 1.5233 2.1616 -0.4532 21 1 3.1786 1.4188 -0.3839 22 1 3.5247 2.8993 1.6106 23 1 4.1386 1.2541 1.9016 24 1 2.8761 1.1601 4.0337 25 1 2.2623 2.8053 3.7427 26 1 5.5161 3.6546 7.0250 27 1 3.1840 -0.4768 1.3839 28 1 1.5312 -0.6026 2.1248 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681305.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:04 Heat of formation + Delta-G solvation = 22.523456 kcal Electronic energy + Delta-G solvation = -9681.541413 eV Core-core repulsion = 7926.243946 eV Total energy + Delta-G solvation = -1755.297467 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.81410 -33.66911 -31.84453 -29.41646 -25.89824 -25.61547 -22.97100 -20.26086 -18.75383 -16.85061 -15.50141 -15.01229 -14.58893 -13.96828 -13.12465 -12.84293 -12.61111 -12.36524 -11.77053 -11.55297 -11.16062 -10.91430 -10.66733 -10.20711 -9.88175 -9.76824 -9.55109 -9.17846 -8.50379 -8.34984 -6.01959 -3.99977 3.34853 3.41787 3.49510 4.44580 4.49541 4.55402 5.08513 5.32969 5.38754 5.52684 5.62695 5.73251 5.88447 5.92426 6.03524 6.10072 6.14955 6.31613 6.47932 6.72398 6.90043 7.22769 7.47423 7.66764 7.86517 8.55633 9.01806 9.61004 11.11470 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.081667 B = 0.010834 C = 0.009998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.775458 B = 2583.886910 C = 2799.978426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C -0.002 4.002 4 N -0.473 5.473 5 C 0.034 3.966 6 C -0.002 4.002 7 C -0.522 4.522 8 H 0.070 0.930 9 C 0.067 3.933 10 N -0.905 5.905 11 Si 0.881 3.119 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.263 1.263 15 C 0.002 3.998 16 H 0.054 0.946 17 H 0.052 0.948 18 H 0.066 0.934 19 H 0.075 0.925 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.037 0.963 24 H 0.010 0.990 25 H 0.023 0.977 26 H 0.263 0.737 27 H 0.066 0.934 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 -6.593 -10.259 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C -0.131 4.131 4 N -0.196 5.196 5 C -0.093 4.093 6 C -0.040 4.040 7 C -0.561 4.561 8 H 0.088 0.912 9 C -0.134 4.134 10 N -0.544 5.544 11 Si 0.708 3.292 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.187 1.187 15 C -0.127 4.127 16 H 0.073 0.927 17 H 0.071 0.929 18 H 0.085 0.915 19 H 0.093 0.907 20 H 0.096 0.904 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.028 0.972 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.598 -6.165 -9.706 14.357 hybrid contribution 0.261 -0.435 0.366 0.625 sum -8.337 -6.600 -9.340 14.153 Atomic orbital electron populations 1.21456 0.93253 1.01204 1.02361 1.22586 0.96664 0.97405 0.97642 1.23819 0.99858 0.97211 0.92237 1.68946 1.36519 1.07168 1.06937 1.22677 0.89196 0.98813 0.98647 1.19432 0.97636 0.96501 0.90408 1.21126 0.99244 1.41968 0.93740 0.91218 1.24999 0.95883 0.94495 0.98003 1.69918 1.27531 1.44631 1.12346 0.86751 0.84188 0.78189 0.80069 1.20357 1.21415 1.18739 1.23881 1.00144 0.92086 0.96571 0.92731 0.92919 0.91465 0.90674 0.90355 0.91882 0.91762 0.94493 0.97186 0.95881 0.92754 0.91551 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.72 37.16 0.36 -1.08 15 2 C -0.12 -1.58 4.76 -90.08 -0.43 -2.01 15 3 C 0.00 -0.03 7.26 -7.53 -0.05 -0.08 15 4 N -0.47 -8.65 6.14 -244.60 -1.50 -10.15 15 5 C 0.03 0.73 4.76 -3.83 -0.02 0.72 15 6 C 0.00 -0.05 4.37 -27.88 -0.12 -0.17 15 7 C -0.52 -15.43 9.66 -34.44 -0.33 -15.76 15 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 15 9 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 10 N -0.91 -28.54 13.96 55.43 0.77 -27.76 15 11 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 15 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 14 H -0.26 -6.57 6.54 56.52 0.37 -6.20 15 15 C 0.00 0.04 7.25 -7.54 -0.05 -0.02 15 16 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 17 H 0.05 0.53 8.14 -51.93 -0.42 0.10 15 18 H 0.07 0.88 7.93 -51.93 -0.41 0.47 15 19 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 20 H 0.08 1.08 8.11 -51.93 -0.42 0.66 15 21 H 0.06 0.88 7.91 -51.93 -0.41 0.47 15 22 H 0.06 1.37 8.08 -51.93 -0.42 0.95 15 23 H 0.04 0.77 7.30 -51.93 -0.38 0.40 15 24 H 0.01 0.25 7.58 -51.93 -0.39 -0.14 15 25 H 0.02 0.60 7.19 -51.93 -0.37 0.23 15 26 H 0.26 7.73 8.31 -40.82 -0.34 7.39 15 27 H 0.07 1.02 7.42 -51.93 -0.39 0.64 15 28 H 0.08 1.22 8.12 -51.93 -0.42 0.80 15 LS Contribution 231.93 15.07 3.50 3.50 Total: -1.00 -31.25 231.93 -7.12 -38.37 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -4.47 Total: -5.31 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -0.75 Total: -16.49 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.73 Total: -37.91 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.25 -7.12 -38.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681305.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.890 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds