Wall clock time and date at job start Mon Mar 30 2020 01:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53524 * 114.16927 * 2 1 4 4 N 1.47480 * 87.93064 * 87.81055 * 3 2 1 5 5 C 1.46896 * 110.99824 * 138.70002 * 4 3 2 6 6 C 1.52996 * 109.47256 * 169.99800 * 5 4 3 7 7 C 1.50702 * 109.47159 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72211 * 7 6 5 10 10 N 1.31514 * 119.99985 * 180.27663 * 9 7 6 11 11 Si 1.86800 * 119.99777 * 0.28166 * 9 7 6 12 12 H 1.48498 * 109.47109 * 89.99834 * 11 9 7 13 13 H 1.48507 * 109.46754 * 209.99574 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99405 * 11 9 7 15 15 C 1.47485 * 87.83616 * 27.01016 * 4 3 2 16 16 H 1.09001 * 109.46957 * 59.99928 * 1 2 3 17 17 H 1.08994 * 109.46547 * 180.02562 * 1 2 3 18 18 H 1.09001 * 109.46878 * 300.00234 * 1 2 3 19 19 H 1.08998 * 113.25611 * 227.04881 * 2 1 3 20 20 H 1.09001 * 113.47237 * 333.04381 * 3 2 1 21 21 H 1.08999 * 113.47150 * 202.58073 * 3 2 1 22 22 H 1.09004 * 109.46774 * 50.00000 * 5 4 3 23 23 H 1.09000 * 109.47723 * 290.00388 * 5 4 3 24 24 H 1.09004 * 109.47066 * 60.00378 * 6 5 4 25 25 H 1.08994 * 109.47405 * 300.00209 * 6 5 4 26 26 H 0.96996 * 119.99730 * 180.02562 * 10 9 7 27 27 H 1.09004 * 113.47596 * 87.75586 * 15 4 3 28 28 H 1.08999 * 113.47128 * 218.21852 * 15 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1586 1.4007 0.0000 4 7 2.0855 1.3751 1.4728 5 6 3.3048 1.9356 2.0702 6 6 3.0959 2.1237 3.5741 7 6 4.3466 2.6993 4.1869 8 1 5.2046 2.9104 3.5657 9 6 4.3935 2.9625 5.5396 10 7 5.4831 3.4699 6.0734 11 14 2.9094 2.5980 6.6139 12 1 3.0029 1.2099 7.1329 13 1 2.8766 3.5510 7.7524 14 1 1.6690 2.7437 5.8105 15 6 2.1628 -0.0956 1.3953 16 1 -0.3633 0.5139 -0.8900 17 1 -0.3632 -1.0276 0.0005 18 1 -0.3633 0.5139 0.8900 19 1 1.9604 -0.6823 -0.7330 20 1 1.5233 2.1616 -0.4532 21 1 3.1786 1.4188 -0.3839 22 1 3.5247 2.8993 1.6106 23 1 4.1386 1.2541 1.9016 24 1 2.8761 1.1601 4.0337 25 1 2.2623 2.8053 3.7427 26 1 5.5161 3.6546 7.0250 27 1 3.1840 -0.4768 1.3839 28 1 1.5312 -0.6026 2.1248 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681305.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:04 Heat of formation + Delta-G solvation = 0.087531 kcal Electronic energy + Delta-G solvation = -9682.514308 eV Core-core repulsion = 7926.243946 eV Total energy + Delta-G solvation = -1756.270362 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.07255 -35.67229 -33.70419 -30.98052 -27.46670 -26.83105 -24.62121 -22.13817 -19.87367 -19.02494 -16.86622 -16.53554 -16.31277 -15.63828 -14.79550 -14.39229 -14.08460 -13.78394 -13.40730 -13.02477 -12.67868 -12.44161 -12.12807 -11.81285 -11.58927 -11.47462 -11.26157 -11.15678 -10.79671 -9.73802 -8.33588 -6.38231 1.33153 1.35504 1.49398 2.33978 3.01752 3.17552 3.46215 3.96908 4.17137 4.23746 4.44315 4.56510 4.61510 4.73157 4.79878 4.92850 5.07086 5.09998 5.15856 5.23946 5.31939 5.54285 5.60453 5.62131 6.17232 6.25138 6.68713 7.27117 8.83138 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.081667 B = 0.010834 C = 0.009998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.775458 B = 2583.886910 C = 2799.978426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C -0.005 4.005 4 N -0.494 5.494 5 C 0.046 3.954 6 C 0.005 3.995 7 C -0.537 4.537 8 H 0.033 0.967 9 C 0.008 3.992 10 N -0.949 5.949 11 Si 0.952 3.048 12 H -0.265 1.265 13 H -0.279 1.279 14 H -0.253 1.253 15 C -0.007 4.007 16 H 0.069 0.931 17 H 0.070 0.930 18 H 0.046 0.954 19 H 0.102 0.898 20 H 0.087 0.913 21 H 0.068 0.932 22 H 0.056 0.944 23 H 0.034 0.966 24 H 0.012 0.988 25 H 0.016 0.984 26 H 0.268 0.732 27 H 0.066 0.934 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.022 -7.762 -10.963 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.122 4.122 3 C -0.133 4.133 4 N -0.217 5.217 5 C -0.082 4.082 6 C -0.033 4.033 7 C -0.575 4.575 8 H 0.051 0.949 9 C -0.189 4.189 10 N -0.589 5.589 11 Si 0.775 3.225 12 H -0.190 1.190 13 H -0.205 1.205 14 H -0.177 1.177 15 C -0.136 4.136 16 H 0.088 0.912 17 H 0.089 0.911 18 H 0.065 0.935 19 H 0.120 0.880 20 H 0.105 0.895 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.030 0.970 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.472 -7.341 -10.431 16.503 hybrid contribution 0.907 -0.058 0.523 1.049 sum -9.565 -7.399 -9.908 15.633 Atomic orbital electron populations 1.21468 0.92168 1.02361 1.02129 1.22564 0.97365 0.96246 0.96054 1.23943 1.00730 0.99015 0.89662 1.68898 1.34375 1.08943 1.09438 1.22396 0.90808 0.98790 0.96237 1.19299 0.95091 0.95788 0.93098 1.21441 0.99848 1.42293 0.93947 0.94898 1.25972 0.99201 0.94131 0.99600 1.70056 1.29942 1.45850 1.13094 0.85627 0.80108 0.78674 0.78060 1.18973 1.20476 1.17676 1.24012 1.00584 0.90282 0.98722 0.91167 0.91119 0.93474 0.88025 0.89453 0.91350 0.92571 0.94793 0.96961 0.96522 0.92312 0.91597 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 9.72 71.98 0.70 -1.74 15 2 C -0.10 -2.31 4.76 -10.44 -0.05 -2.36 15 3 C 0.00 -0.13 7.26 83.58 0.61 0.48 15 4 N -0.49 -17.36 6.14 -927.78 -5.70 -23.06 15 5 C 0.05 1.96 4.76 86.30 0.41 2.37 15 6 C 0.01 0.26 4.37 29.85 0.13 0.39 15 7 C -0.54 -32.40 9.66 25.60 0.25 -32.15 15 8 H 0.03 2.15 7.99 -2.91 -0.02 2.13 15 9 C 0.01 0.49 5.47 84.66 0.46 0.95 15 10 N -0.95 -60.85 13.96 21.45 0.30 -60.55 15 11 Si 0.95 46.20 27.47 68.60 1.88 48.09 15 12 H -0.26 -12.25 7.11 99.48 0.71 -11.54 15 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 14 H -0.25 -11.78 6.54 99.48 0.65 -11.13 15 15 C -0.01 -0.20 7.25 83.58 0.61 0.40 15 16 H 0.07 1.18 8.14 -2.39 -0.02 1.16 15 17 H 0.07 1.15 8.14 -2.39 -0.02 1.13 15 18 H 0.05 1.12 7.93 -2.39 -0.02 1.10 15 19 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 20 H 0.09 2.18 8.11 -2.39 -0.02 2.17 15 21 H 0.07 1.78 7.91 -2.39 -0.02 1.76 15 22 H 0.06 2.42 8.08 -2.38 -0.02 2.40 15 23 H 0.03 1.43 7.30 -2.39 -0.02 1.41 15 24 H 0.01 0.60 7.58 -2.38 -0.02 0.59 15 25 H 0.02 0.85 7.19 -2.39 -0.02 0.84 15 26 H 0.27 15.93 8.31 -92.71 -0.77 15.16 15 27 H 0.07 1.93 7.42 -2.39 -0.02 1.91 15 28 H 0.08 2.28 8.12 -2.39 -0.02 2.26 15 Total: -1.00 -67.08 231.93 0.64 -66.44 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: 1.05 Total: 0.75 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 3.11 Total: -31.66 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -5.40 Total: -83.62 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.88 Total: 48.09 kcal Total: -67.08 0.64 -66.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681305.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.524 kcal (2) G-P(sol) polarization free energy of solvation -67.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds