Wall clock time and date at job start Mon Mar 30 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 113.01119 * 2 1 4 4 C 1.53937 * 113.72984 * 131.63352 * 2 1 3 5 5 N 1.47955 * 86.18157 * 90.63839 * 4 2 1 6 6 C 1.46898 * 111.00208 * 137.57726 * 5 4 2 7 7 C 1.50704 * 109.47447 * 170.00164 * 6 5 4 8 8 H 1.08001 * 119.99405 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00321 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99679 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00062 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47121 * 59.99990 * 11 9 7 13 13 H 1.48495 * 109.47214 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47264 * 300.00541 * 11 9 7 15 15 C 1.47967 * 90.76348 * 24.68862 * 5 4 2 16 16 H 1.09002 * 109.47399 * 288.37000 * 1 2 3 17 17 H 1.09008 * 109.46853 * 48.36705 * 1 2 3 18 18 H 1.08998 * 109.47327 * 168.36666 * 1 2 3 19 19 H 1.09003 * 109.47120 * 191.62881 * 3 2 1 20 20 H 1.08996 * 109.47121 * 311.63551 * 3 2 1 21 21 H 1.08998 * 109.46969 * 71.63783 * 3 2 1 22 22 H 1.09005 * 113.75745 * 204.95562 * 4 2 1 23 23 H 1.08996 * 113.76539 * 336.32248 * 4 2 1 24 24 H 1.09002 * 109.47503 * 290.00559 * 6 5 4 25 25 H 1.09001 * 109.46828 * 50.00321 * 6 5 4 26 26 H 0.97001 * 119.99886 * 179.97438 * 10 9 7 27 27 H 1.08994 * 113.76237 * 220.99251 * 15 5 4 28 28 H 1.09006 * 113.85968 * 89.63644 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1281 1.4083 0.0000 4 6 2.1495 -0.9362 1.0533 5 7 2.1249 -1.9752 0.0002 6 6 3.3702 -2.7544 0.0002 7 6 3.2160 -3.9479 -0.9070 8 1 2.2861 -4.1110 -1.4314 9 6 4.2621 -4.8316 -1.0674 10 7 5.3943 -4.6333 -0.4284 11 14 4.0708 -6.3113 -2.1913 12 1 3.7762 -5.8497 -3.5717 13 1 5.3292 -7.0996 -2.1905 14 1 2.9544 -7.1613 -1.7049 15 6 2.1495 -0.9363 -1.0531 16 1 -0.3634 0.3239 0.9753 17 1 -0.3633 0.6828 -0.7682 18 1 -0.3634 -1.0065 -0.2072 19 1 3.1966 1.3492 -0.2072 20 1 1.6417 2.0096 -0.7680 21 1 1.9721 1.8692 0.9753 22 1 3.1542 -0.6469 1.3613 23 1 1.4899 -1.1482 1.8947 24 1 4.1894 -2.1302 -0.3567 25 1 3.5865 -3.0936 1.0132 26 1 6.1302 -5.2552 -0.5410 27 1 1.4900 -1.1482 -1.8946 28 1 3.1536 -0.6458 -1.3625 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681374.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:05 Heat of formation + Delta-G solvation = 19.712641 kcal Electronic energy + Delta-G solvation = -9848.047194 eV Core-core repulsion = 8092.627840 eV Total energy + Delta-G solvation = -1755.419353 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.43707 -33.30883 -31.64509 -27.50383 -27.06590 -25.42211 -23.71702 -20.50023 -17.88753 -16.31084 -14.90157 -14.67414 -14.27494 -14.00622 -12.86075 -12.66318 -12.31111 -12.15243 -11.54729 -11.49195 -11.06025 -10.85935 -10.73034 -10.39437 -10.15913 -9.73881 -9.41055 -9.13185 -8.38545 -7.64338 -5.98923 -4.00018 3.36376 3.39542 3.43371 4.46207 4.81517 4.91248 5.25533 5.35931 5.58457 5.80740 5.86406 6.00997 6.14333 6.16365 6.22077 6.33855 6.37107 6.46991 6.66440 6.77578 6.86423 7.28648 7.75074 7.94501 8.20140 8.54529 9.07564 9.63832 11.12145 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.088499 B = 0.011223 C = 0.010700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.313146 B = 2494.318795 C = 2616.265649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.102 4.102 3 C -0.136 4.136 4 C 0.005 3.995 5 N -0.474 5.474 6 C 0.160 3.840 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.053 3.947 10 N -0.902 5.902 11 Si 0.900 3.100 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.021 3.979 16 H 0.050 0.950 17 H 0.049 0.951 18 H 0.066 0.934 19 H 0.053 0.947 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.000 1.000 25 H 0.026 0.974 26 H 0.261 0.739 27 H 0.074 0.926 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.928 8.738 0.425 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.103 4.103 3 C -0.194 4.194 4 C -0.125 4.125 5 N -0.197 5.197 6 C 0.033 3.967 7 C -0.542 4.542 8 H 0.080 0.920 9 C -0.148 4.148 10 N -0.542 5.542 11 Si 0.727 3.273 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.108 4.108 16 H 0.069 0.931 17 H 0.068 0.932 18 H 0.085 0.915 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.018 0.982 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.239 8.123 0.453 10.252 hybrid contribution 0.900 -0.375 -0.547 1.118 sum -5.339 7.748 -0.094 9.410 Atomic orbital electron populations 1.21463 0.93091 1.02271 1.00642 1.22364 0.96127 0.93803 0.97963 1.21764 1.00502 0.95973 1.01121 1.23928 0.99210 0.93146 0.96173 1.68509 1.37778 1.12235 1.01129 1.20222 0.85370 0.93413 0.97658 1.21102 0.99197 1.07741 1.26168 0.92004 1.25015 0.95196 0.98282 0.96301 1.69953 1.03752 1.37553 1.42913 0.86535 0.77220 0.82462 0.81040 1.20277 1.21363 1.20167 1.23897 0.99386 0.91796 0.95729 0.93108 0.93209 0.91475 0.92755 0.92896 0.92894 0.92391 0.90794 0.98230 0.95557 0.92925 0.90772 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.14 37.16 0.34 -1.33 15 2 C -0.10 -1.65 1.42 -153.58 -0.22 -1.87 15 3 C -0.14 -1.83 9.22 37.16 0.34 -1.49 15 4 C 0.00 0.09 7.09 -2.77 -0.02 0.07 15 5 N -0.47 -10.84 6.01 -239.40 -1.44 -12.28 15 6 C 0.16 4.36 4.55 -4.97 -0.02 4.34 15 7 C -0.50 -14.87 9.36 -34.44 -0.32 -15.19 15 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 15 9 C 0.05 1.55 5.46 -17.82 -0.10 1.46 15 10 N -0.90 -27.58 13.29 55.43 0.74 -26.85 15 11 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 15 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 13 H -0.29 -7.01 7.11 56.52 0.40 -6.60 15 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 15 C 0.02 0.42 7.03 -2.76 -0.02 0.40 15 16 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 17 H 0.05 0.62 8.14 -51.92 -0.42 0.20 15 18 H 0.07 1.06 7.98 -51.93 -0.41 0.64 15 19 H 0.05 0.76 7.94 -51.93 -0.41 0.34 15 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.06 1.10 7.88 -51.93 -0.41 0.69 15 23 H 0.07 1.30 8.10 -51.93 -0.42 0.88 15 24 H 0.00 0.00 7.38 -51.93 -0.38 -0.39 15 25 H 0.03 0.77 8.08 -51.93 -0.42 0.35 15 26 H 0.26 7.53 8.31 -40.82 -0.34 7.20 15 27 H 0.07 1.42 8.10 -51.93 -0.42 1.00 15 28 H 0.06 1.24 7.30 -51.93 -0.38 0.86 15 LS Contribution 234.87 15.07 3.54 3.54 Total: -1.00 -30.68 234.87 -6.70 -37.38 By element: Atomic # 1 Polarization: -0.94 SS G_CDS: -4.49 Total: -5.44 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -0.02 Total: -13.62 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.70 Total: -39.13 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.68 -6.70 -37.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681374.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.093 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds