Wall clock time and date at job start Mon Mar 30 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 113.01119 * 2 1 4 4 C 1.53937 * 113.72984 * 131.63352 * 2 1 3 5 5 N 1.47955 * 86.18157 * 90.63839 * 4 2 1 6 6 C 1.46898 * 111.00208 * 137.57726 * 5 4 2 7 7 C 1.50704 * 109.47447 * 170.00164 * 6 5 4 8 8 H 1.08001 * 119.99405 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00321 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99679 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00062 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47121 * 59.99990 * 11 9 7 13 13 H 1.48495 * 109.47214 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47264 * 300.00541 * 11 9 7 15 15 C 1.47967 * 90.76348 * 24.68862 * 5 4 2 16 16 H 1.09002 * 109.47399 * 288.37000 * 1 2 3 17 17 H 1.09008 * 109.46853 * 48.36705 * 1 2 3 18 18 H 1.08998 * 109.47327 * 168.36666 * 1 2 3 19 19 H 1.09003 * 109.47120 * 191.62881 * 3 2 1 20 20 H 1.08996 * 109.47121 * 311.63551 * 3 2 1 21 21 H 1.08998 * 109.46969 * 71.63783 * 3 2 1 22 22 H 1.09005 * 113.75745 * 204.95562 * 4 2 1 23 23 H 1.08996 * 113.76539 * 336.32248 * 4 2 1 24 24 H 1.09002 * 109.47503 * 290.00559 * 6 5 4 25 25 H 1.09001 * 109.46828 * 50.00321 * 6 5 4 26 26 H 0.97001 * 119.99886 * 179.97438 * 10 9 7 27 27 H 1.08994 * 113.76237 * 220.99251 * 15 5 4 28 28 H 1.09006 * 113.85968 * 89.63644 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1281 1.4083 0.0000 4 6 2.1495 -0.9362 1.0533 5 7 2.1249 -1.9752 0.0002 6 6 3.3702 -2.7544 0.0002 7 6 3.2160 -3.9479 -0.9070 8 1 2.2861 -4.1110 -1.4314 9 6 4.2621 -4.8316 -1.0674 10 7 5.3943 -4.6333 -0.4284 11 14 4.0708 -6.3113 -2.1913 12 1 3.7762 -5.8497 -3.5717 13 1 5.3292 -7.0996 -2.1905 14 1 2.9544 -7.1613 -1.7049 15 6 2.1495 -0.9363 -1.0531 16 1 -0.3634 0.3239 0.9753 17 1 -0.3633 0.6828 -0.7682 18 1 -0.3634 -1.0065 -0.2072 19 1 3.1966 1.3492 -0.2072 20 1 1.6417 2.0096 -0.7680 21 1 1.9721 1.8692 0.9753 22 1 3.1542 -0.6469 1.3613 23 1 1.4899 -1.1482 1.8947 24 1 4.1894 -2.1302 -0.3567 25 1 3.5865 -3.0936 1.0132 26 1 6.1302 -5.2552 -0.5410 27 1 1.4900 -1.1482 -1.8946 28 1 3.1536 -0.6458 -1.3625 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681374.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:05 Heat of formation + Delta-G solvation = -1.884977 kcal Electronic energy + Delta-G solvation = -9848.983737 eV Core-core repulsion = 8092.627840 eV Total energy + Delta-G solvation = -1756.355896 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.01379 -35.36623 -33.40278 -29.44267 -28.20609 -27.00978 -25.67918 -22.38028 -19.31734 -18.53188 -16.82554 -16.25416 -15.88289 -15.69923 -14.42563 -14.26523 -14.00711 -13.66196 -13.02875 -12.92417 -12.80287 -12.68538 -12.25866 -12.23224 -11.89347 -11.43423 -11.13507 -10.96828 -10.63549 -9.47315 -8.24524 -6.36060 1.37888 1.42140 1.50421 2.37987 3.06769 3.31671 3.44572 3.91724 4.35428 4.37719 4.57016 4.69775 4.73750 4.82985 4.88216 4.95989 5.03082 5.10083 5.18532 5.23263 5.34004 5.57153 5.61370 5.81236 6.10770 6.48655 6.78711 7.33901 8.86489 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.088499 B = 0.011223 C = 0.010700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.313146 B = 2494.318795 C = 2616.265649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 C -0.132 4.132 4 C -0.001 4.001 5 N -0.494 5.494 6 C 0.175 3.825 7 C -0.530 4.530 8 H 0.058 0.942 9 C -0.001 4.001 10 N -0.936 5.936 11 Si 0.974 3.026 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.268 1.268 15 C 0.013 3.987 16 H 0.071 0.929 17 H 0.073 0.927 18 H 0.046 0.954 19 H 0.043 0.957 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.052 0.948 23 H 0.087 0.913 24 H -0.026 1.026 25 H -0.004 1.004 26 H 0.266 0.734 27 H 0.077 0.923 28 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 9.337 -0.140 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.079 4.079 3 C -0.189 4.189 4 C -0.130 4.130 5 N -0.216 5.216 6 C 0.048 3.952 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.198 4.198 10 N -0.576 5.576 11 Si 0.798 3.202 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.193 1.193 15 C -0.116 4.116 16 H 0.090 0.910 17 H 0.092 0.908 18 H 0.066 0.934 19 H 0.062 0.938 20 H 0.093 0.907 21 H 0.091 0.909 22 H 0.070 0.930 23 H 0.105 0.895 24 H -0.008 1.008 25 H 0.014 0.986 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.474 8.741 -0.107 11.501 hybrid contribution 1.278 -0.525 -0.334 1.421 sum -6.196 8.216 -0.441 10.300 Atomic orbital electron populations 1.21467 0.91066 1.01880 1.02737 1.22280 0.97449 0.94361 0.93826 1.21736 0.99845 0.94208 1.03117 1.24064 0.99632 0.92809 0.96542 1.68442 1.34939 1.14162 1.04076 1.19886 0.86729 0.93294 0.95268 1.21425 0.99363 1.09009 1.26973 0.92416 1.25997 0.94591 1.01496 0.97758 1.70080 1.04581 1.38826 1.44126 0.85366 0.77636 0.78236 0.78956 1.19146 1.20405 1.19279 1.23977 0.99289 0.92179 0.96202 0.91034 0.90798 0.93436 0.93792 0.90668 0.90877 0.93013 0.89500 1.00822 0.98577 0.92533 0.90437 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.91 9.14 71.98 0.66 -2.25 15 2 C -0.08 -2.40 1.42 -51.54 -0.07 -2.47 15 3 C -0.13 -3.17 9.22 71.98 0.66 -2.50 15 4 C 0.00 -0.05 7.09 86.41 0.61 0.56 15 5 N -0.49 -22.97 6.01 -911.34 -5.47 -28.44 15 6 C 0.18 9.97 4.55 85.56 0.39 10.36 15 7 C -0.53 -31.98 9.36 25.60 0.24 -31.74 15 8 H 0.06 3.45 7.81 -2.91 -0.02 3.42 15 9 C 0.00 -0.03 5.46 84.66 0.46 0.43 15 10 N -0.94 -58.26 13.29 21.45 0.28 -57.97 15 11 Si 0.97 45.75 29.54 68.60 2.03 47.77 15 12 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 13 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 14 H -0.27 -12.16 7.11 99.48 0.71 -11.46 15 15 C 0.01 0.50 7.03 86.40 0.61 1.11 15 16 H 0.07 1.55 8.14 -2.39 -0.02 1.53 15 17 H 0.07 1.54 8.14 -2.38 -0.02 1.53 15 18 H 0.05 1.40 7.98 -2.39 -0.02 1.38 15 19 H 0.04 1.15 7.94 -2.39 -0.02 1.13 15 20 H 0.07 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.07 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.05 1.98 7.88 -2.38 -0.02 1.97 15 23 H 0.09 2.97 8.10 -2.39 -0.02 2.96 15 24 H -0.03 -1.57 7.38 -2.39 -0.02 -1.59 15 25 H 0.00 -0.24 8.08 -2.39 -0.02 -0.26 15 26 H 0.27 15.47 8.31 -92.71 -0.77 14.70 15 27 H 0.08 2.95 8.10 -2.39 -0.02 2.93 15 28 H 0.05 2.00 7.30 -2.38 -0.02 1.99 15 Total: -1.00 -66.64 234.87 1.50 -65.15 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: 1.10 Total: 0.00 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 3.56 Total: -26.51 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -5.19 Total: -86.42 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -66.64 1.50 -65.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681374.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.262 kcal (2) G-P(sol) polarization free energy of solvation -66.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds