Wall clock time and date at job start Mon Mar 30 2020 01:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00400 * 2 1 4 4 H 1.48500 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46896 * 59.99848 * 3 2 1 6 6 H 1.48496 * 109.47242 * 300.00012 * 3 2 1 7 7 C 1.37878 * 119.99255 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99550 * 173.30281 * 7 2 1 9 9 C 1.50695 * 120.00260 * 353.29935 * 7 2 1 10 10 H 1.08995 * 109.47160 * 328.72702 * 9 7 2 11 11 C 1.53006 * 109.47124 * 88.73009 * 9 7 2 12 12 C 1.53000 * 109.47298 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.46875 * 299.99998 * 12 11 9 14 14 C 1.52997 * 109.47510 * 60.00152 * 13 12 11 15 15 C 1.53000 * 109.46928 * 299.99816 * 14 13 12 16 16 H 1.09001 * 109.46915 * 299.99605 * 15 14 13 17 17 N 1.46895 * 109.47078 * 179.97438 * 15 14 13 18 18 H 0.96998 * 120.00890 * 174.55243 * 1 2 3 19 19 H 1.09003 * 109.46785 * 299.99773 * 11 9 7 20 20 H 1.09005 * 109.46917 * 59.99528 * 11 9 7 21 21 H 1.09001 * 109.46915 * 60.00188 * 12 11 9 22 22 H 1.09001 * 109.46894 * 179.97438 * 12 11 9 23 23 H 1.09004 * 109.46700 * 180.02562 * 13 12 11 24 24 H 1.08995 * 109.47144 * 299.99599 * 13 12 11 25 25 H 1.09001 * 109.47000 * 59.99369 * 14 13 12 26 26 H 1.08994 * 109.47039 * 179.97438 * 14 13 12 27 27 H 1.00907 * 111.00302 * 59.99829 * 17 15 14 28 28 H 1.00906 * 111.00317 * 183.95087 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 1.2125 6 1 1.8906 2.3964 -1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0789 -1.1973 -0.1096 9 6 1.2585 -2.4948 0.1512 10 1 0.3746 -2.3368 0.7690 11 6 0.8328 -3.0024 -1.2280 12 6 0.0760 -4.3232 -1.0741 13 6 0.9859 -5.3576 -0.4085 14 6 1.4116 -4.8501 0.9707 15 6 2.1683 -3.5293 0.8167 16 1 3.0523 -3.6869 0.1988 17 7 2.5766 -3.0417 2.1409 18 1 -0.4851 -0.8362 -0.0797 19 1 0.1849 -2.2652 -1.7024 20 1 1.7168 -3.1603 -1.8459 21 1 -0.8080 -4.1656 -0.4562 22 1 -0.2276 -4.6845 -2.0566 23 1 0.4469 -6.2987 -0.2992 24 1 1.8698 -5.5152 -1.0264 25 1 0.5276 -4.6925 1.5886 26 1 2.0594 -5.5872 1.4450 27 1 3.1785 -3.7076 2.6017 28 1 3.0219 -2.1388 2.0724 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104634923.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:55 Heat of formation + Delta-G solvation = -55.276521 kcal Electronic energy + Delta-G solvation = -10214.481579 eV Core-core repulsion = 8455.810452 eV Total energy + Delta-G solvation = -1758.671127 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.64689 -35.05574 -34.27912 -31.19309 -28.90565 -26.29296 -23.06622 -22.39472 -20.54464 -18.81186 -16.43577 -16.17795 -15.66474 -15.49565 -15.10248 -14.96421 -13.64970 -13.41475 -13.07360 -12.87529 -12.48250 -12.28544 -11.94497 -11.86786 -11.63289 -11.44489 -10.90672 -10.49328 -10.18817 -9.39157 -8.54689 -6.23976 1.52890 1.61874 1.76552 2.59861 3.23855 3.74180 3.96595 4.08528 4.32604 4.48296 4.52276 4.70701 4.75592 4.88261 4.90458 5.05998 5.22260 5.27778 5.36430 5.46821 5.60593 5.69397 6.15081 6.31030 6.50764 6.69120 6.90377 7.55791 8.84324 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.061637 B = 0.016513 C = 0.014177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.166124 B = 1695.181421 C = 1974.586224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.031 4.031 3 Si 1.114 2.886 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.593 4.593 8 H 0.039 0.961 9 C 0.034 3.966 10 H 0.000 1.000 11 C -0.104 4.104 12 C -0.118 4.118 13 C -0.106 4.106 14 C -0.107 4.107 15 C 0.108 3.892 16 H 0.011 0.989 17 N -0.848 5.848 18 H 0.258 0.742 19 H 0.021 0.979 20 H 0.042 0.958 21 H 0.045 0.955 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.336 0.664 28 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 -8.034 -0.074 9.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.229 4.229 3 Si 0.937 3.063 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.631 4.631 8 H 0.057 0.943 9 C 0.015 3.985 10 H 0.019 0.981 11 C -0.143 4.143 12 C -0.155 4.155 13 C -0.144 4.144 14 C -0.145 4.145 15 C -0.004 4.004 16 H 0.029 0.971 17 N -0.379 5.379 18 H 0.068 0.932 19 H 0.040 0.960 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.088 0.912 23 H 0.102 0.898 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.148 0.852 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.238 -6.424 0.179 7.196 hybrid contribution 0.908 -1.359 -0.524 1.717 sum 4.146 -7.784 -0.345 8.826 Atomic orbital electron populations 1.70816 1.07985 1.30293 1.48799 1.27106 0.96561 1.06161 0.93096 0.82972 0.74364 0.71842 0.77081 1.19625 1.20793 1.21167 1.22223 0.94137 0.93427 1.53351 0.94264 1.18861 0.94439 0.93305 0.91917 0.98143 1.21600 0.98097 0.95535 0.99042 1.21586 0.98147 0.95332 1.00449 1.21450 0.99430 0.98036 0.95500 1.21543 0.99809 0.95589 0.97532 1.21220 0.95714 0.94497 0.88937 0.97138 1.58653 1.50008 1.07600 1.21593 0.93161 0.96042 0.93905 0.93625 0.91239 0.89816 0.91816 0.93226 0.90939 0.85166 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.68 13.55 21.45 0.29 -58.39 15 2 C -0.03 -1.81 5.45 84.65 0.46 -1.35 15 3 Si 1.11 51.14 29.91 68.60 2.05 53.19 15 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 6 H -0.29 -12.82 7.11 99.48 0.71 -12.11 15 7 C -0.59 -33.13 7.12 25.60 0.18 -32.94 15 8 H 0.04 2.17 7.82 -2.91 -0.02 2.15 15 9 C 0.03 1.72 1.46 -11.54 -0.02 1.70 15 10 H 0.00 0.02 6.97 -2.39 -0.02 0.00 15 11 C -0.10 -4.78 5.10 30.60 0.16 -4.63 15 12 C -0.12 -4.26 5.92 30.59 0.18 -4.08 15 13 C -0.11 -3.26 5.92 30.59 0.18 -3.08 15 14 C -0.11 -3.67 5.50 30.59 0.17 -3.50 15 15 C 0.11 4.51 2.75 44.92 0.12 4.64 15 16 H 0.01 0.45 8.14 -2.39 -0.02 0.43 15 17 N -0.85 -33.94 9.23 -168.68 -1.56 -35.50 15 18 H 0.26 16.35 6.40 -92.71 -0.59 15.76 15 19 H 0.02 1.08 7.71 -2.39 -0.02 1.06 15 20 H 0.04 1.91 8.14 -2.38 -0.02 1.89 15 21 H 0.04 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 23 H 0.08 2.08 8.14 -2.38 -0.02 2.06 15 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 15 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 27 H 0.34 10.83 9.04 -89.69 -0.81 10.02 15 28 H 0.34 14.68 7.87 -89.69 -0.71 13.98 15 Total: -1.00 -63.83 224.17 2.02 -61.81 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.20 Total: 22.14 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 1.44 Total: -43.25 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -1.27 Total: -93.89 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.05 Total: 53.19 kcal Total: -63.83 2.02 -61.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104634923.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.534 kcal (2) G-P(sol) polarization free energy of solvation -63.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds