Wall clock time and date at job start Mon Mar 30 2020 01:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00023 * 2 1 4 4 H 1.48501 * 109.46776 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47133 * 240.00455 * 3 2 1 6 6 H 1.48500 * 109.47138 * 119.99825 * 3 2 1 7 7 C 1.37872 * 119.99994 * 180.02562 * 2 1 3 8 8 C 1.51274 * 120.85316 * 5.24092 * 7 2 1 9 9 C 1.53655 * 108.31238 * 231.38318 * 8 7 2 10 10 C 1.52966 * 109.32201 * 305.13507 * 9 8 7 11 11 H 1.08998 * 109.41553 * 303.62348 * 10 9 8 12 12 C 1.52995 * 109.35675 * 183.79755 * 10 9 8 13 13 N 1.46899 * 109.47082 * 64.68346 * 12 10 9 14 14 C 1.52958 * 109.81695 * 63.72839 * 10 9 8 15 15 C 1.51276 * 120.85109 * 184.95676 * 7 2 1 16 16 H 0.96998 * 119.99593 * 174.58149 * 1 2 3 17 17 H 1.09003 * 109.62235 * 351.03929 * 8 7 2 18 18 H 1.09001 * 109.62488 * 111.60466 * 8 7 2 19 19 H 1.08995 * 109.41776 * 185.25021 * 9 8 7 20 20 H 1.08994 * 109.64371 * 65.16081 * 9 8 7 21 21 H 1.09000 * 109.47200 * 184.68234 * 12 10 9 22 22 H 1.08999 * 109.47119 * 304.68563 * 12 10 9 23 23 H 1.00903 * 111.00111 * 56.04437 * 13 12 10 24 24 H 1.00903 * 111.00615 * 180.02562 * 13 12 10 25 25 H 1.08998 * 109.48251 * 176.42104 * 14 10 9 26 26 H 1.09004 * 109.49320 * 56.39005 * 14 10 9 27 27 H 1.08996 * 109.62500 * 248.39486 * 15 7 2 28 28 H 1.08998 * 109.61933 * 8.96124 * 15 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6964 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 6 1.2724 -2.5124 -0.1197 9 6 1.7421 -3.4302 1.0196 10 6 3.2664 -3.5503 0.9771 11 1 3.5741 -3.9121 -0.0039 12 6 3.7274 -4.5378 2.0509 13 7 3.2152 -5.8781 1.7360 14 6 3.9018 -2.1834 1.2370 15 6 3.5129 -1.2190 0.1117 16 1 -0.4849 -0.8363 -0.0793 17 1 0.1988 -2.3438 -0.0366 18 1 1.5002 -2.9720 -1.0815 19 1 1.2962 -4.4172 0.8971 20 1 1.4372 -3.0099 1.9780 21 1 4.8168 -4.5624 2.0783 22 1 3.3466 -4.2223 3.0223 23 1 3.5014 -6.1668 0.8125 24 1 3.5059 -6.5490 2.4313 25 1 4.9864 -2.2867 1.2687 26 1 3.5459 -1.7922 2.1902 27 1 3.9444 -1.5609 -0.8290 28 1 3.8793 -0.2189 0.3435 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104650145.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:00 Heat of formation + Delta-G solvation = -31.771183 kcal Electronic energy + Delta-G solvation = -10113.699914 eV Core-core repulsion = 8356.048054 eV Total energy + Delta-G solvation = -1757.651860 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.44469 -34.09684 -31.77961 -29.48867 -27.83478 -23.60697 -21.71412 -20.49996 -19.12075 -16.50600 -15.46631 -14.25423 -14.00271 -13.83475 -13.36964 -12.66254 -12.27303 -11.48009 -11.37064 -11.01965 -10.83368 -10.51575 -10.05748 -9.92190 -9.74008 -9.40137 -8.94214 -8.48075 -8.31360 -8.11663 -6.33587 -3.90533 3.44810 3.46121 3.66353 4.54495 4.88317 5.28796 5.53287 5.66262 5.89467 6.16648 6.25836 6.44796 6.61741 6.81171 6.94166 7.02771 7.10677 7.17456 7.27571 7.36957 7.45369 7.49947 7.66011 7.77311 8.20651 8.42928 8.99048 9.71737 11.04280 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.074778 B = 0.015333 C = 0.013419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.349698 B = 1825.699133 C = 2086.139152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.031 3.969 3 Si 1.063 2.937 4 H -0.288 1.288 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.564 4.564 8 C -0.002 4.002 9 C -0.092 4.092 10 C -0.070 4.070 11 H 0.053 0.947 12 C 0.064 3.936 13 N -0.848 5.848 14 C -0.103 4.103 15 C -0.006 4.006 16 H 0.271 0.729 17 H 0.033 0.967 18 H 0.002 0.998 19 H 0.040 0.960 20 H 0.042 0.958 21 H 0.015 0.985 22 H 0.066 0.934 23 H 0.336 0.664 24 H 0.331 0.669 25 H 0.027 0.973 26 H 0.050 0.950 27 H 0.009 0.991 28 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.156 -5.919 2.467 9.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.174 4.174 3 Si 0.892 3.108 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.583 4.583 8 C -0.040 4.040 9 C -0.129 4.129 10 C -0.089 4.089 11 H 0.071 0.929 12 C -0.067 4.067 13 N -0.376 5.376 14 C -0.141 4.141 15 C -0.044 4.044 16 H 0.084 0.916 17 H 0.051 0.949 18 H 0.021 0.979 19 H 0.059 0.941 20 H 0.061 0.939 21 H 0.033 0.967 22 H 0.084 0.916 23 H 0.148 0.852 24 H 0.143 0.857 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.027 0.973 28 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 6.213 -3.940 2.625 7.811 hybrid contribution 1.280 -1.978 -0.084 2.358 sum 7.493 -5.919 2.541 9.881 Atomic orbital electron populations 1.70812 1.06837 1.31063 1.46164 1.25750 0.96306 1.01806 0.93499 0.83606 0.74760 0.75655 0.76760 1.21392 1.21301 1.21340 1.21067 0.91046 0.92670 1.53532 1.19557 0.97051 0.94392 0.92956 1.21534 0.93349 0.97981 1.00080 1.20955 0.97681 0.93917 0.96301 0.92894 1.21983 0.95330 0.89208 1.00172 1.58685 1.68119 1.04001 1.06825 1.21585 0.96036 0.95744 1.00764 1.19549 0.97216 0.94179 0.93436 0.91613 0.94867 0.97948 0.94088 0.93892 0.96666 0.91571 0.85150 0.85736 0.95413 0.93099 0.97259 0.95852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.88 13.66 55.43 0.76 -27.13 15 2 C 0.03 0.88 5.46 -17.82 -0.10 0.79 15 3 Si 1.06 25.70 27.19 -169.99 -4.62 21.08 15 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.29 -6.60 7.11 56.52 0.40 -6.19 15 7 C -0.56 -15.54 5.50 -98.92 -0.54 -16.08 15 8 C 0.00 -0.05 5.99 -27.26 -0.16 -0.22 15 9 C -0.09 -2.08 5.16 -26.41 -0.14 -2.21 15 10 C -0.07 -1.40 2.23 -90.66 -0.20 -1.60 15 11 H 0.05 1.08 8.14 -51.93 -0.42 0.65 15 12 C 0.06 1.04 6.17 -3.83 -0.02 1.02 15 13 N -0.85 -12.28 8.99 -10.37 -0.09 -12.37 15 14 C -0.10 -2.18 5.21 -26.64 -0.14 -2.32 15 15 C -0.01 -0.15 5.56 -27.48 -0.15 -0.30 15 16 H 0.27 8.25 6.36 -40.82 -0.26 7.99 15 17 H 0.03 0.91 5.80 -51.93 -0.30 0.61 15 18 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 15 19 H 0.04 0.88 7.63 -51.93 -0.40 0.49 15 20 H 0.04 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 15 22 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 23 H 0.34 4.51 8.99 -39.29 -0.35 4.15 15 24 H 0.33 3.89 9.08 -39.29 -0.36 3.53 15 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 26 H 0.05 1.11 8.14 -51.93 -0.42 0.68 15 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 15 28 H 0.02 0.55 5.25 -51.93 -0.27 0.28 15 LS Contribution 220.68 15.07 3.33 3.33 Total: -1.00 -29.79 220.68 -6.21 -36.00 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.12 Total: 0.02 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -1.46 Total: -20.92 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.66 Total: -39.50 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -4.62 Total: 21.08 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -29.79 -6.21 -36.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104650145.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.225 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds