Wall clock time and date at job start Mon Mar 30 2020 01:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00023 * 2 1 4 4 H 1.48501 * 109.46776 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47133 * 240.00455 * 3 2 1 6 6 H 1.48500 * 109.47138 * 119.99825 * 3 2 1 7 7 C 1.37872 * 119.99994 * 180.02562 * 2 1 3 8 8 C 1.51274 * 120.85316 * 5.24092 * 7 2 1 9 9 C 1.53655 * 108.31238 * 231.38318 * 8 7 2 10 10 C 1.52966 * 109.32201 * 305.13507 * 9 8 7 11 11 H 1.08998 * 109.41553 * 303.62348 * 10 9 8 12 12 C 1.52995 * 109.35675 * 183.79755 * 10 9 8 13 13 N 1.46899 * 109.47082 * 64.68346 * 12 10 9 14 14 C 1.52958 * 109.81695 * 63.72839 * 10 9 8 15 15 C 1.51276 * 120.85109 * 184.95676 * 7 2 1 16 16 H 0.96998 * 119.99593 * 174.58149 * 1 2 3 17 17 H 1.09003 * 109.62235 * 351.03929 * 8 7 2 18 18 H 1.09001 * 109.62488 * 111.60466 * 8 7 2 19 19 H 1.08995 * 109.41776 * 185.25021 * 9 8 7 20 20 H 1.08994 * 109.64371 * 65.16081 * 9 8 7 21 21 H 1.09000 * 109.47200 * 184.68234 * 12 10 9 22 22 H 1.08999 * 109.47119 * 304.68563 * 12 10 9 23 23 H 1.00903 * 111.00111 * 56.04437 * 13 12 10 24 24 H 1.00903 * 111.00615 * 180.02562 * 13 12 10 25 25 H 1.08998 * 109.48251 * 176.42104 * 14 10 9 26 26 H 1.09004 * 109.49320 * 56.39005 * 14 10 9 27 27 H 1.08996 * 109.62500 * 248.39486 * 15 7 2 28 28 H 1.08998 * 109.61933 * 8.96124 * 15 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6964 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 6 1.2724 -2.5124 -0.1197 9 6 1.7421 -3.4302 1.0196 10 6 3.2664 -3.5503 0.9771 11 1 3.5741 -3.9121 -0.0039 12 6 3.7274 -4.5378 2.0509 13 7 3.2152 -5.8781 1.7360 14 6 3.9018 -2.1834 1.2370 15 6 3.5129 -1.2190 0.1117 16 1 -0.4849 -0.8363 -0.0793 17 1 0.1988 -2.3438 -0.0366 18 1 1.5002 -2.9720 -1.0815 19 1 1.2962 -4.4172 0.8971 20 1 1.4372 -3.0099 1.9780 21 1 4.8168 -4.5624 2.0783 22 1 3.3466 -4.2223 3.0223 23 1 3.5014 -6.1668 0.8125 24 1 3.5059 -6.5490 2.4313 25 1 4.9864 -2.2867 1.2687 26 1 3.5459 -1.7922 2.1902 27 1 3.9444 -1.5609 -0.8290 28 1 3.8793 -0.2189 0.3435 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104650145.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:00 Heat of formation + Delta-G solvation = -52.584206 kcal Electronic energy + Delta-G solvation = -10114.602434 eV Core-core repulsion = 8356.048054 eV Total energy + Delta-G solvation = -1758.554380 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.17434 -35.76832 -33.56840 -31.38984 -29.64127 -25.28244 -23.61636 -22.31039 -20.85502 -18.51951 -16.90268 -15.89302 -15.62410 -15.49095 -14.98222 -14.51616 -14.18126 -13.27036 -13.04414 -12.84011 -12.66399 -12.32547 -11.92112 -11.83600 -11.42957 -11.28595 -10.85601 -10.52478 -10.18366 -9.50099 -8.57091 -6.13256 1.50047 1.57323 1.76809 2.56659 3.15763 3.72257 4.00896 4.19182 4.31676 4.65754 4.72803 4.74262 4.85849 5.00819 5.07530 5.19003 5.25048 5.37121 5.37785 5.53234 5.56708 5.80066 6.12606 6.27536 6.28824 6.68652 6.78305 7.57240 8.80228 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.074778 B = 0.015333 C = 0.013419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.349698 B = 1825.699133 C = 2086.139152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.027 4.027 3 Si 1.100 2.900 4 H -0.295 1.295 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.573 4.573 8 C -0.010 4.010 9 C -0.080 4.080 10 C -0.067 4.067 11 H 0.053 0.947 12 C 0.074 3.926 13 N -0.857 5.857 14 C -0.100 4.100 15 C -0.014 4.014 16 H 0.256 0.744 17 H 0.006 0.994 18 H -0.003 1.003 19 H 0.050 0.950 20 H 0.025 0.975 21 H 0.039 0.961 22 H 0.062 0.938 23 H 0.344 0.656 24 H 0.350 0.650 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.013 0.987 28 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.499 -6.541 3.046 11.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.224 4.224 3 Si 0.924 3.076 4 H -0.222 1.222 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.592 4.592 8 C -0.047 4.047 9 C -0.118 4.118 10 C -0.086 4.086 11 H 0.071 0.929 12 C -0.057 4.057 13 N -0.388 5.388 14 C -0.138 4.138 15 C -0.051 4.051 16 H 0.068 0.932 17 H 0.024 0.976 18 H 0.016 0.984 19 H 0.068 0.932 20 H 0.044 0.956 21 H 0.057 0.943 22 H 0.080 0.920 23 H 0.157 0.843 24 H 0.163 0.837 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.582 -4.600 3.209 10.252 hybrid contribution 0.526 -1.873 -0.310 1.970 sum 9.108 -6.473 2.899 11.544 Atomic orbital electron populations 1.70928 1.08130 1.30232 1.49569 1.27117 0.96340 1.05569 0.93329 0.83134 0.74173 0.71919 0.78407 1.22168 1.19219 1.19006 1.21688 0.93342 0.92818 1.51386 1.19618 0.95609 0.95323 0.94198 1.21368 0.95913 0.97167 0.97334 1.20896 0.95118 0.94699 0.97842 0.92896 1.21753 0.96626 0.89078 0.98226 1.58587 1.68469 1.03749 1.07994 1.21516 0.98303 0.95268 0.98763 1.19630 0.94735 0.95773 0.94995 0.93196 0.97585 0.98437 0.93176 0.95637 0.94266 0.91997 0.84291 0.83687 0.91882 0.93964 0.96836 0.95124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.82 13.66 21.45 0.29 -59.52 15 2 C -0.03 -1.55 5.46 84.65 0.46 -1.09 15 3 Si 1.10 51.11 27.19 68.60 1.87 52.98 15 4 H -0.29 -13.96 7.11 99.48 0.71 -13.25 15 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 7 C -0.57 -31.52 5.50 -16.17 -0.09 -31.61 15 8 C -0.01 -0.52 5.99 30.25 0.18 -0.34 15 9 C -0.08 -3.57 5.16 30.80 0.16 -3.41 15 10 C -0.07 -2.50 2.23 -10.82 -0.02 -2.52 15 11 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 12 C 0.07 2.16 6.17 86.30 0.53 2.69 15 13 N -0.86 -21.98 8.99 -186.73 -1.68 -23.66 15 14 C -0.10 -3.94 5.21 30.66 0.16 -3.78 15 15 C -0.01 -0.63 5.56 30.11 0.17 -0.47 15 16 H 0.26 16.38 6.36 -92.71 -0.59 15.79 15 17 H 0.01 0.32 5.80 -2.39 -0.01 0.31 15 18 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 15 19 H 0.05 2.12 7.63 -2.39 -0.02 2.10 15 20 H 0.02 1.20 8.14 -2.39 -0.02 1.18 15 21 H 0.04 0.99 8.14 -2.39 -0.02 0.97 15 22 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 23 H 0.34 8.07 8.99 -89.69 -0.81 7.26 15 24 H 0.35 6.96 9.08 -89.69 -0.81 6.15 15 25 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 26 H 0.04 1.72 8.14 -2.39 -0.02 1.71 15 27 H 0.01 0.61 8.14 -2.39 -0.02 0.59 15 28 H 0.03 1.36 5.25 -2.39 -0.01 1.35 15 Total: -1.00 -63.92 220.68 1.74 -62.18 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -0.29 Total: 8.55 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 1.55 Total: -40.52 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -1.39 Total: -83.18 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 1.87 Total: 52.98 kcal Total: -63.92 1.74 -62.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104650145.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.594 kcal (2) G-P(sol) polarization free energy of solvation -63.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds