Wall clock time and date at job start Mon Mar 30 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.46087 * 2 1 4 4 C 1.54381 * 110.41540 * 237.58746 * 2 1 3 5 5 C 1.54257 * 105.14978 * 217.42327 * 4 2 1 6 6 H 1.08995 * 110.32942 * 118.94877 * 5 4 2 7 7 C 1.50712 * 110.32186 * 241.05248 * 5 4 2 8 8 H 1.08000 * 119.99732 * 359.97438 * 7 5 4 9 9 C 1.37873 * 119.99993 * 179.97438 * 7 5 4 10 10 N 1.31511 * 120.00093 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 119.99907 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47080 * 60.00029 * 11 9 7 13 13 H 1.48501 * 109.47402 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47393 * 300.00145 * 11 9 7 15 15 C 1.54377 * 105.06382 * 359.94367 * 5 4 2 16 16 N 1.48567 * 104.59159 * 23.85582 * 15 5 4 17 17 C 1.46900 * 110.99718 * 200.95714 * 16 15 5 18 18 H 1.09004 * 109.46937 * 182.40996 * 1 2 3 19 19 H 1.08992 * 109.47157 * 302.41185 * 1 2 3 20 20 H 1.08998 * 109.46781 * 62.41175 * 1 2 3 21 21 H 1.09002 * 110.32526 * 98.47145 * 4 2 1 22 22 H 1.08998 * 110.32190 * 336.36786 * 4 2 1 23 23 H 0.97001 * 120.00322 * 179.97438 * 10 9 7 24 24 H 1.08999 * 110.41555 * 142.63458 * 15 5 4 25 25 H 1.09004 * 110.41760 * 264.96131 * 15 5 4 26 26 H 1.09001 * 109.47381 * 60.13026 * 17 16 15 27 27 H 1.09007 * 109.46597 * 180.12437 * 17 16 15 28 28 H 1.08998 * 109.47174 * 300.12470 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0685 -0.7755 -1.2214 5 6 3.3173 -1.5208 -0.7072 6 1 3.1849 -2.5978 -0.8104 7 6 4.5427 -1.0705 -1.4603 8 1 4.4558 -0.3241 -2.2360 9 6 5.7746 -1.6115 -1.1589 10 7 5.8804 -2.5200 -0.2140 11 14 7.2932 -1.0539 -2.0928 12 1 7.4853 0.4058 -1.8990 13 1 8.4831 -1.7812 -1.5825 14 1 7.1187 -1.3425 -3.5390 15 6 3.4310 -1.1327 0.7827 16 7 2.0510 -0.7474 1.1754 17 6 2.0624 0.0996 2.3756 18 1 -0.3633 -1.0268 0.0432 19 1 -0.3633 0.5508 0.8675 20 1 -0.3633 0.4759 -0.9108 21 1 2.3417 -0.0841 -2.0186 22 1 1.3230 -1.4867 -1.5771 23 1 6.7470 -2.9009 -0.0022 24 1 3.7705 -1.9841 1.3726 25 1 4.1122 -0.2906 0.9054 26 1 2.6327 1.0066 2.1749 27 1 1.0394 0.3653 2.6424 28 1 2.5233 -0.4445 3.2000 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107217567.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:34 Heat of formation + Delta-G solvation = -8.762572 kcal Electronic energy + Delta-G solvation = -10085.106156 eV Core-core repulsion = 8328.452025 eV Total energy + Delta-G solvation = -1756.654131 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.08437 -33.11864 -31.15436 -30.07658 -25.58267 -24.90609 -23.15649 -19.58804 -19.12868 -16.50560 -14.70398 -14.46800 -14.11590 -13.70128 -12.86545 -12.68768 -12.02753 -11.85516 -11.35833 -11.11776 -10.92747 -10.54925 -10.51808 -10.37074 -10.12126 -9.60645 -9.11810 -8.85975 -8.39703 -7.59626 -6.01173 -4.04303 3.31961 3.36789 3.39163 4.43602 4.91412 5.30934 5.57520 5.69188 5.87877 5.98306 6.06453 6.20845 6.31813 6.35400 6.51598 6.54009 6.76974 6.99763 7.06409 7.21866 7.56623 7.71114 7.85305 7.97232 8.07396 8.48537 8.99689 9.59763 11.08709 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.071924 B = 0.014141 C = 0.012956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.204662 B = 1979.613726 C = 2160.649803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 H 0.040 0.960 4 C -0.113 4.113 5 C 0.047 3.953 6 H 0.035 0.965 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.889 5.889 11 Si 0.891 3.109 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.060 3.940 16 N -0.525 5.525 17 C 0.018 3.982 18 H 0.059 0.941 19 H 0.042 0.958 20 H 0.050 0.950 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.261 0.739 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.929 4.234 1.518 7.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.051 4.051 3 H 0.058 0.942 4 C -0.151 4.151 5 C 0.027 3.973 6 H 0.053 0.947 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.527 5.527 11 Si 0.719 3.281 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.067 4.067 16 N -0.250 5.250 17 C -0.131 4.131 18 H 0.078 0.922 19 H 0.062 0.938 20 H 0.069 0.931 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.117 3.649 1.758 7.336 hybrid contribution 1.494 1.057 -0.496 1.896 sum -4.623 4.706 1.262 6.716 Atomic orbital electron populations 1.21697 0.95420 1.01731 1.00077 1.22621 0.94345 0.95717 0.92438 0.94228 1.22483 0.98607 0.98419 0.95634 1.19366 0.91291 0.96010 0.90592 0.94672 1.21243 0.91946 1.23087 1.19216 0.92636 1.25018 0.98970 0.94877 0.95165 1.69955 1.24519 1.27722 1.30520 0.86683 0.82455 0.78722 0.80289 1.20377 1.21277 1.20215 1.23195 0.85120 0.99061 0.99335 1.65451 1.21992 1.35321 1.02193 1.22404 1.00168 0.95701 0.94824 0.92205 0.93842 0.93080 0.92501 0.93276 0.92926 0.91052 0.94989 0.96282 0.92694 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.32 37.16 0.35 -1.75 15 2 C 0.06 1.13 2.89 -65.98 -0.19 0.93 15 3 H 0.04 0.79 7.91 -51.93 -0.41 0.38 15 4 C -0.11 -2.47 6.18 -25.35 -0.16 -2.63 15 5 C 0.05 1.21 2.94 -90.39 -0.27 0.94 15 6 H 0.04 0.99 8.14 -51.93 -0.42 0.57 15 7 C -0.52 -14.42 8.38 -34.44 -0.29 -14.71 15 8 H 0.06 1.52 7.36 -52.49 -0.39 1.14 15 9 C 0.06 1.73 5.34 -17.82 -0.10 1.64 15 10 N -0.89 -25.86 12.56 55.43 0.70 -25.16 15 11 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 15 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 15 C 0.06 1.48 5.21 -2.18 -0.01 1.47 15 16 N -0.52 -11.06 5.34 -230.20 -1.23 -12.29 15 17 C 0.02 0.33 9.43 60.06 0.57 0.89 15 18 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 19 H 0.04 0.63 7.67 -51.93 -0.40 0.23 15 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.06 1.22 7.42 -51.93 -0.39 0.84 15 22 H 0.05 1.00 7.86 -51.93 -0.41 0.59 15 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 24 H 0.07 1.88 8.04 -51.93 -0.42 1.46 15 25 H 0.03 0.83 7.69 -51.93 -0.40 0.44 15 26 H 0.02 0.33 7.98 -51.93 -0.41 -0.08 15 27 H 0.05 0.85 7.64 -51.93 -0.40 0.45 15 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 LS Contribution 228.88 15.07 3.45 3.45 Total: -1.00 -28.63 228.88 -6.64 -35.28 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -4.44 Total: -4.48 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.10 Total: -13.21 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.53 Total: -37.46 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.63 -6.64 -35.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107217567.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.513 kcal (2) G-P(sol) polarization free energy of solvation -28.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds