Wall clock time and date at job start Mon Mar 30 2020 02:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.45637 * 2 1 4 4 C 1.54382 * 110.40921 * 237.59263 * 2 1 3 5 5 H 1.08990 * 110.40887 * 336.30441 * 4 2 1 6 6 C 1.50697 * 110.32268 * 98.47293 * 4 2 1 7 7 H 1.07991 * 120.00449 * 356.81076 * 6 4 2 8 8 C 1.37885 * 119.99686 * 177.08907 * 6 4 2 9 9 N 1.31516 * 119.99913 * 359.72095 * 8 6 4 10 10 Si 1.86798 * 119.99766 * 179.72528 * 8 6 4 11 11 H 1.48493 * 109.47326 * 90.00142 * 10 8 6 12 12 H 1.48506 * 109.46545 * 209.99892 * 10 8 6 13 13 H 1.48498 * 109.47210 * 329.99603 * 10 8 6 14 14 C 1.54268 * 105.05525 * 217.36776 * 4 2 1 15 15 C 1.54375 * 105.06300 * 359.97438 * 14 4 2 16 16 N 1.48555 * 110.41018 * 122.41860 * 2 1 3 17 17 C 1.46909 * 110.99738 * 277.81684 * 16 2 1 18 18 H 1.09003 * 109.47097 * 182.41126 * 1 2 3 19 19 H 1.09000 * 109.47183 * 302.41317 * 1 2 3 20 20 H 1.09002 * 109.46697 * 62.41137 * 1 2 3 21 21 H 0.97000 * 119.99651 * 180.02562 * 9 8 6 22 22 H 1.08994 * 110.32370 * 118.89610 * 14 4 2 23 23 H 1.08996 * 110.31857 * 241.10388 * 14 4 2 24 24 H 1.09000 * 110.41357 * 142.62862 * 15 14 4 25 25 H 1.09002 * 110.41429 * 264.96333 * 15 14 4 26 26 H 1.08997 * 109.47054 * 304.45485 * 17 16 2 27 27 H 1.08994 * 109.46970 * 64.45650 * 17 16 2 28 28 H 1.08996 * 109.46689 * 184.45802 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0684 -0.7755 -1.2216 5 1 1.3243 -1.4877 -1.5777 6 6 2.4461 0.1806 -2.3235 7 1 2.2726 1.2396 -2.2026 8 6 3.0079 -0.2974 -3.4885 9 7 3.2191 -1.5871 -3.6357 10 14 3.4690 0.8869 -4.8575 11 1 4.8678 1.3463 -4.6644 12 1 3.3504 0.1987 -6.1680 13 1 2.5551 2.0571 -4.8284 14 6 3.3178 -1.5188 -0.7055 15 6 3.4295 -1.1294 0.7842 16 7 2.0481 -0.7464 1.1753 17 6 2.0569 0.1013 2.3751 18 1 -0.3633 -1.0268 0.0432 19 1 -0.3633 0.5508 0.8676 20 1 -0.3633 0.4760 -0.9108 21 1 3.6147 -1.9233 -4.4551 22 1 3.1862 -2.5960 -0.8067 23 1 4.2041 -1.1921 -1.2493 24 1 3.7694 -1.9800 1.3750 25 1 4.1094 -0.2863 0.9068 26 1 2.6300 1.0068 2.1761 27 1 1.0337 0.3693 2.6381 28 1 2.5136 -0.4435 3.2014 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107217578.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:43 Heat of formation + Delta-G solvation = -7.553514 kcal Electronic energy + Delta-G solvation = -10146.385060 eV Core-core repulsion = 8389.783357 eV Total energy + Delta-G solvation = -1756.601703 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.12839 -33.14074 -30.67330 -30.27631 -26.28607 -24.16352 -23.20986 -19.86767 -18.95177 -16.32085 -14.73370 -14.44136 -14.19401 -13.76111 -12.79411 -12.65447 -12.06787 -11.82884 -11.28992 -11.00677 -10.76669 -10.47247 -10.45198 -10.38019 -10.16200 -9.69409 -9.02849 -8.70453 -8.35129 -7.74633 -5.99039 -4.02656 3.31008 3.37941 3.41013 4.44128 4.85245 5.33362 5.65568 5.77428 5.91504 6.09928 6.17251 6.24338 6.28582 6.36899 6.46166 6.65651 6.85893 6.98765 7.23758 7.27937 7.61963 7.72866 7.84245 7.93849 8.05266 8.50699 9.00232 9.60993 11.10126 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.066027 B = 0.015029 C = 0.013918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.967728 B = 1862.578574 C = 2011.326971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.059 3.941 3 H 0.042 0.958 4 C 0.054 3.946 5 H 0.034 0.966 6 C -0.514 4.514 7 H 0.054 0.946 8 C 0.062 3.938 9 N -0.887 5.887 10 Si 0.889 3.111 11 H -0.282 1.282 12 H -0.286 1.286 13 H -0.275 1.275 14 C -0.093 4.093 15 C 0.030 3.970 16 N -0.519 5.519 17 C 0.017 3.983 18 H 0.054 0.946 19 H 0.033 0.967 20 H 0.057 0.943 21 H 0.260 0.740 22 H 0.045 0.955 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.030 0.970 26 H 0.020 0.980 27 H 0.060 0.940 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 2.285 6.444 6.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.048 4.048 3 H 0.060 0.940 4 C 0.035 3.965 5 H 0.053 0.947 6 C -0.553 4.553 7 H 0.072 0.928 8 C -0.140 4.140 9 N -0.525 5.525 10 Si 0.717 3.283 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.200 1.200 14 C -0.132 4.132 15 C -0.098 4.098 16 N -0.243 5.243 17 C -0.133 4.133 18 H 0.073 0.927 19 H 0.052 0.948 20 H 0.077 0.923 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.395 1.688 6.452 6.813 hybrid contribution 0.875 1.357 -0.885 1.842 sum -0.519 3.046 5.567 6.367 Atomic orbital electron populations 1.21613 0.95507 1.01236 0.99939 1.22889 0.94586 0.95996 0.91340 0.94032 1.19409 0.93040 0.93953 0.90120 0.94746 1.21208 1.40818 0.93219 1.00059 0.92799 1.24970 0.95820 0.95015 0.98186 1.69993 1.43759 1.12059 1.26721 0.86646 0.78786 0.81198 0.81682 1.20783 1.21224 1.19954 1.22202 1.01434 0.99153 0.90387 1.23183 0.89064 0.98459 0.99050 1.65352 1.18593 1.37013 1.03375 1.22436 1.00852 0.95557 0.94439 0.92673 0.94756 0.92350 0.93057 0.93637 0.91532 0.92170 0.95166 0.96178 0.92160 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.32 37.16 0.35 -2.07 15 2 C 0.06 1.31 2.41 -66.07 -0.16 1.15 15 3 H 0.04 0.95 7.47 -51.93 -0.39 0.56 15 4 C 0.05 1.38 2.54 -90.39 -0.23 1.15 15 5 H 0.03 0.96 7.86 -51.93 -0.41 0.55 15 6 C -0.51 -14.25 8.37 -34.44 -0.29 -14.54 15 7 H 0.05 1.48 7.58 -52.49 -0.40 1.08 15 8 C 0.06 1.73 5.09 -17.82 -0.09 1.63 15 9 N -0.89 -25.67 12.34 55.43 0.68 -24.98 15 10 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 15 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 14 C -0.09 -2.27 5.75 -25.35 -0.15 -2.41 15 15 C 0.03 0.62 6.49 -2.17 -0.01 0.61 15 16 N -0.52 -10.51 5.34 -230.32 -1.23 -11.74 15 17 C 0.02 0.27 9.42 60.07 0.57 0.84 15 18 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15 19 H 0.03 0.57 7.64 -51.93 -0.40 0.18 15 20 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 21 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 22 H 0.04 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.07 1.75 7.23 -51.93 -0.38 1.38 15 24 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 25 H 0.03 0.61 7.97 -51.93 -0.41 0.19 15 26 H 0.02 0.33 7.98 -51.93 -0.41 -0.09 15 27 H 0.06 0.91 7.61 -51.93 -0.40 0.52 15 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 LS Contribution 228.30 15.07 3.44 3.44 Total: -1.00 -28.50 228.30 -6.58 -35.09 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -4.44 Total: -4.51 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -0.02 Total: -13.64 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.55 Total: -36.72 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.50 -6.58 -35.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107217578.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.532 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds