Wall clock time and date at job start Mon Mar 30 2020 02:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.45637 * 2 1 4 4 C 1.54382 * 110.40921 * 237.59263 * 2 1 3 5 5 H 1.08990 * 110.40887 * 336.30441 * 4 2 1 6 6 C 1.50697 * 110.32268 * 98.47293 * 4 2 1 7 7 H 1.07991 * 120.00449 * 356.81076 * 6 4 2 8 8 C 1.37885 * 119.99686 * 177.08907 * 6 4 2 9 9 N 1.31516 * 119.99913 * 359.72095 * 8 6 4 10 10 Si 1.86798 * 119.99766 * 179.72528 * 8 6 4 11 11 H 1.48493 * 109.47326 * 90.00142 * 10 8 6 12 12 H 1.48506 * 109.46545 * 209.99892 * 10 8 6 13 13 H 1.48498 * 109.47210 * 329.99603 * 10 8 6 14 14 C 1.54268 * 105.05525 * 217.36776 * 4 2 1 15 15 C 1.54375 * 105.06300 * 359.97438 * 14 4 2 16 16 N 1.48555 * 110.41018 * 122.41860 * 2 1 3 17 17 C 1.46909 * 110.99738 * 277.81684 * 16 2 1 18 18 H 1.09003 * 109.47097 * 182.41126 * 1 2 3 19 19 H 1.09000 * 109.47183 * 302.41317 * 1 2 3 20 20 H 1.09002 * 109.46697 * 62.41137 * 1 2 3 21 21 H 0.97000 * 119.99651 * 180.02562 * 9 8 6 22 22 H 1.08994 * 110.32370 * 118.89610 * 14 4 2 23 23 H 1.08996 * 110.31857 * 241.10388 * 14 4 2 24 24 H 1.09000 * 110.41357 * 142.62862 * 15 14 4 25 25 H 1.09002 * 110.41429 * 264.96333 * 15 14 4 26 26 H 1.08997 * 109.47054 * 304.45485 * 17 16 2 27 27 H 1.08994 * 109.46970 * 64.45650 * 17 16 2 28 28 H 1.08996 * 109.46689 * 184.45802 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0684 -0.7755 -1.2216 5 1 1.3243 -1.4877 -1.5777 6 6 2.4461 0.1806 -2.3235 7 1 2.2726 1.2396 -2.2026 8 6 3.0079 -0.2974 -3.4885 9 7 3.2191 -1.5871 -3.6357 10 14 3.4690 0.8869 -4.8575 11 1 4.8678 1.3463 -4.6644 12 1 3.3504 0.1987 -6.1680 13 1 2.5551 2.0571 -4.8284 14 6 3.3178 -1.5188 -0.7055 15 6 3.4295 -1.1294 0.7842 16 7 2.0481 -0.7464 1.1753 17 6 2.0569 0.1013 2.3751 18 1 -0.3633 -1.0268 0.0432 19 1 -0.3633 0.5508 0.8676 20 1 -0.3633 0.4760 -0.9108 21 1 3.6147 -1.9233 -4.4551 22 1 3.1862 -2.5960 -0.8067 23 1 4.2041 -1.1921 -1.2493 24 1 3.7694 -1.9800 1.3750 25 1 4.1094 -0.2863 0.9068 26 1 2.6300 1.0068 2.1761 27 1 1.0337 0.3693 2.6381 28 1 2.5136 -0.4435 3.2014 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107217578.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:43 Heat of formation + Delta-G solvation = -26.384002 kcal Electronic energy + Delta-G solvation = -10147.201611 eV Core-core repulsion = 8389.783357 eV Total energy + Delta-G solvation = -1757.418254 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.85362 -35.14044 -32.45682 -32.02144 -28.17166 -25.70747 -25.11945 -21.66607 -20.76282 -18.39133 -16.72925 -16.10838 -15.91586 -15.41505 -14.48476 -14.30304 -13.86104 -13.42194 -13.03896 -12.89203 -12.56228 -12.35214 -12.19350 -12.03429 -11.87205 -11.65116 -10.89669 -10.79012 -10.47597 -9.33511 -8.12879 -6.23770 1.40572 1.41222 1.51646 2.42307 3.17486 3.28309 4.07385 4.20755 4.41715 4.45713 4.64028 4.71285 4.74397 4.79316 4.98745 5.04061 5.09504 5.23312 5.39870 5.47235 5.62132 5.77185 5.90594 6.00566 6.33014 6.43243 6.87141 7.43721 8.96073 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.066027 B = 0.015029 C = 0.013918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.967728 B = 1862.578574 C = 2011.326971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.065 3.935 3 H 0.033 0.967 4 C 0.045 3.955 5 H 0.000 1.000 6 C -0.531 4.531 7 H 0.052 0.948 8 C 0.012 3.988 9 N -0.918 5.918 10 Si 0.955 3.045 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.267 1.267 14 C -0.089 4.089 15 C 0.039 3.961 16 N -0.525 5.525 17 C 0.015 3.985 18 H 0.050 0.950 19 H 0.064 0.936 20 H 0.051 0.949 21 H 0.261 0.739 22 H 0.029 0.971 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.036 0.964 26 H 0.022 0.978 27 H 0.077 0.923 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 3.319 7.501 8.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.043 4.043 3 H 0.052 0.948 4 C 0.026 3.974 5 H 0.018 0.982 6 C -0.570 4.570 7 H 0.070 0.930 8 C -0.187 4.187 9 N -0.557 5.557 10 Si 0.780 3.220 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.192 1.192 14 C -0.128 4.128 15 C -0.088 4.088 16 N -0.250 5.250 17 C -0.133 4.133 18 H 0.069 0.931 19 H 0.083 0.917 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.501 2.731 7.526 8.146 hybrid contribution 0.898 1.009 -1.190 1.800 sum -0.603 3.739 6.336 7.382 Atomic orbital electron populations 1.21539 0.93579 1.01464 1.01049 1.22728 0.96179 0.94872 0.90535 0.94848 1.19388 0.92836 0.93586 0.91605 0.98182 1.21517 1.40868 0.93459 1.01111 0.92994 1.25767 0.95743 0.96606 1.00595 1.70118 1.44419 1.13777 1.27359 0.85609 0.78657 0.79160 0.78571 1.20127 1.20868 1.19179 1.22016 0.99667 0.97912 0.93156 1.23089 0.89829 0.99567 0.96354 1.65354 1.17931 1.37819 1.03850 1.22549 1.02339 0.95319 0.93115 0.93057 0.91674 0.93011 0.93029 0.95169 0.94289 0.89815 0.94549 0.95982 0.90477 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.40 9.32 71.98 0.67 -3.73 15 2 C 0.06 2.78 2.41 45.07 0.11 2.89 15 3 H 0.03 1.48 7.47 -2.39 -0.02 1.47 15 4 C 0.04 2.34 2.54 -10.64 -0.03 2.32 15 5 H 0.00 0.00 7.86 -2.39 -0.02 -0.02 15 6 C -0.53 -29.80 8.37 25.60 0.21 -29.59 15 7 H 0.05 2.86 7.58 -2.92 -0.02 2.84 15 8 C 0.01 0.67 5.09 84.66 0.43 1.10 15 9 N -0.92 -54.23 12.34 21.45 0.26 -53.97 15 10 Si 0.95 44.01 29.54 68.60 2.03 46.03 15 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 13 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 14 C -0.09 -4.40 5.75 31.49 0.18 -4.22 15 15 C 0.04 1.57 6.49 86.44 0.56 2.13 15 16 N -0.53 -20.11 5.34 -882.59 -4.72 -24.82 15 17 C 0.02 0.45 9.42 127.69 1.20 1.65 15 18 H 0.05 1.92 8.14 -2.39 -0.02 1.90 15 19 H 0.06 2.00 7.64 -2.39 -0.02 1.98 15 20 H 0.05 1.95 8.14 -2.39 -0.02 1.94 15 21 H 0.26 14.63 8.31 -92.71 -0.77 13.86 15 22 H 0.03 1.52 8.14 -2.39 -0.02 1.50 15 23 H 0.04 2.10 7.23 -2.39 -0.02 2.08 15 24 H 0.08 2.93 8.14 -2.39 -0.02 2.91 15 25 H 0.04 1.40 7.97 -2.39 -0.02 1.38 15 26 H 0.02 0.64 7.98 -2.39 -0.02 0.62 15 27 H 0.08 2.02 7.61 -2.39 -0.02 2.00 15 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 15 Total: -1.00 -60.76 228.30 2.02 -58.74 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 1.10 Total: 1.47 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 3.34 Total: -27.45 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -4.45 Total: -78.79 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -60.76 2.02 -58.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107217578.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.358 kcal (2) G-P(sol) polarization free energy of solvation -60.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds