Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46797 * 2 1 4 4 H 1.08997 * 110.89377 * 57.42268 * 3 2 1 5 5 C 1.55155 * 111.03647 * 181.33104 * 3 2 1 6 6 C 1.54327 * 102.94571 * 153.58896 * 5 3 2 7 7 N 1.47024 * 107.26774 * 337.80617 * 6 5 3 8 8 C 1.36941 * 125.64618 * 179.20447 * 7 6 5 9 9 H 1.08005 * 119.99780 * 179.68989 * 8 7 6 10 10 C 1.38813 * 119.99913 * 359.69358 * 8 7 6 11 11 N 1.31616 * 119.99926 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99719 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47341 * 89.99896 * 12 10 8 14 14 H 1.48503 * 109.46756 * 209.99724 * 12 10 8 15 15 H 1.48496 * 109.46957 * 329.99498 * 12 10 8 16 16 C 1.47426 * 108.70449 * 358.94057 * 7 6 5 17 17 H 1.09004 * 109.46731 * 60.00500 * 1 2 3 18 18 H 1.08995 * 109.46754 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.46948 * 300.00395 * 1 2 3 20 20 H 1.08995 * 109.47341 * 239.99975 * 2 1 3 21 21 H 1.08995 * 109.46561 * 119.99412 * 2 1 3 22 22 H 1.08999 * 110.71965 * 271.94862 * 5 3 2 23 23 H 1.09000 * 110.72417 * 35.04883 * 5 3 2 24 24 H 1.08995 * 109.88184 * 218.39040 * 6 5 3 25 25 H 1.09002 * 109.88385 * 97.22047 * 6 5 3 26 26 H 0.97001 * 119.99407 * 180.02562 * 11 10 8 27 27 H 1.09002 * 110.36518 * 142.96440 * 16 7 6 28 28 H 1.08995 * 110.36673 * 265.17549 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6526 1.9917 0.8581 5 6 3.5906 1.4851 -0.0336 6 6 3.8847 2.8463 -0.6987 7 7 2.6878 3.2260 -1.4635 8 6 2.5362 4.3779 -2.1885 9 1 1.6155 4.5628 -2.7220 10 6 3.5658 5.3076 -2.2376 11 7 4.6875 5.0824 -1.5870 12 14 3.3586 6.8792 -3.2260 13 1 2.7789 7.9363 -2.3591 14 1 4.6821 7.3241 -3.7314 15 1 2.4501 6.6263 -4.3731 16 6 1.6804 2.1585 -1.3258 17 1 -0.3633 0.5138 -0.8901 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8899 20 1 1.8934 -0.5138 -0.8899 21 1 1.8933 -0.5137 0.8900 22 1 3.9993 1.4532 0.9763 23 1 3.9860 0.6660 -0.6343 24 1 4.7392 2.7544 -1.3691 25 1 4.0894 3.5959 0.0657 26 1 5.4068 5.7323 -1.6211 27 1 0.6798 2.5867 -1.2664 28 1 1.7462 1.4645 -2.1637 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108280825.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = -12.759629 kcal Electronic energy + Delta-G solvation = -9989.717202 eV Core-core repulsion = 8232.889745 eV Total energy + Delta-G solvation = -1756.827457 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.39476 -35.45194 -33.23075 -30.95552 -28.47390 -26.64658 -23.63330 -21.85003 -20.79271 -18.86446 -16.90082 -16.46254 -15.69008 -15.12103 -14.28621 -13.97294 -13.81549 -13.47691 -13.24112 -12.89471 -12.74476 -12.37954 -12.02840 -11.93959 -11.72663 -11.35185 -11.24490 -11.16122 -10.71942 -8.90308 -7.86001 -5.22048 1.44052 1.47146 1.55914 2.49191 3.31694 3.68839 3.92211 4.06649 4.15336 4.50654 4.60078 4.68624 4.73809 4.83932 5.02183 5.04505 5.19602 5.23240 5.36527 5.42802 5.46107 5.60904 5.68668 5.77519 6.19608 7.09520 7.77825 8.43463 9.24831 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.087769 B = 0.012740 C = 0.011396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.941899 B = 2197.278564 C = 2456.349389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 C -0.092 4.092 4 H 0.068 0.932 5 C -0.128 4.128 6 C 0.182 3.818 7 N -0.633 5.633 8 C -0.247 4.247 9 H 0.082 0.918 10 C -0.071 4.071 11 N -0.955 5.955 12 Si 0.983 3.017 13 H -0.284 1.284 14 H -0.293 1.293 15 H -0.268 1.268 16 C 0.135 3.865 17 H 0.045 0.955 18 H 0.070 0.930 19 H 0.054 0.946 20 H 0.061 0.939 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.002 0.998 25 H 0.008 0.992 26 H 0.247 0.753 27 H 0.037 0.963 28 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 -8.500 3.066 10.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.111 4.111 4 H 0.087 0.913 5 C -0.166 4.166 6 C 0.057 3.943 7 N -0.360 5.360 8 C -0.376 4.376 9 H 0.100 0.900 10 C -0.263 4.263 11 N -0.604 5.604 12 Si 0.811 3.189 13 H -0.211 1.211 14 H -0.219 1.219 15 H -0.192 1.192 16 C 0.011 3.989 17 H 0.064 0.936 18 H 0.089 0.911 19 H 0.073 0.927 20 H 0.080 0.920 21 H 0.096 0.904 22 H 0.097 0.903 23 H 0.089 0.911 24 H 0.020 0.980 25 H 0.026 0.974 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.765 -8.330 3.005 10.567 hybrid contribution 0.343 1.183 -0.567 1.356 sum -5.422 -7.146 2.438 9.296 Atomic orbital electron populations 1.21763 0.95077 1.02157 1.01649 1.21410 0.96494 0.93641 1.02488 1.22322 0.94880 0.97044 0.96857 0.91320 1.22802 0.96352 0.96807 1.00684 1.20920 0.88377 0.92386 0.92620 1.44901 1.14241 1.19237 1.57597 1.19534 1.00228 0.95175 1.22663 0.90010 1.25740 0.96054 1.02417 1.02121 1.70223 1.05994 1.36585 1.47577 0.85010 0.76657 0.78983 0.78279 1.21073 1.21911 1.19237 1.21798 0.91936 0.89538 0.95658 0.93551 0.91150 0.92664 0.91988 0.90385 0.90323 0.91146 0.97988 0.97413 0.94409 0.94425 0.96135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.76 71.98 0.70 -2.67 15 2 C -0.10 -2.64 5.45 30.60 0.17 -2.47 15 3 C -0.09 -3.20 3.07 -9.40 -0.03 -3.23 15 4 H 0.07 2.43 8.14 -2.39 -0.02 2.41 15 5 C -0.13 -4.92 6.42 31.78 0.20 -4.71 15 6 C 0.18 9.60 5.37 86.73 0.47 10.07 15 7 N -0.63 -34.78 3.39 -691.97 -2.35 -37.13 15 8 C -0.25 -14.62 10.28 84.03 0.86 -13.75 15 9 H 0.08 4.60 7.83 -2.91 -0.02 4.58 15 10 C -0.07 -4.21 5.49 84.86 0.47 -3.75 15 11 N -0.95 -60.04 10.31 21.65 0.22 -59.82 15 12 Si 0.98 47.26 29.55 68.60 2.03 49.29 15 13 H -0.28 -13.32 7.11 99.48 0.71 -12.62 15 14 H -0.29 -14.05 7.11 99.48 0.71 -13.34 15 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 16 C 0.14 5.83 5.89 86.86 0.51 6.35 15 17 H 0.05 1.14 7.46 -2.38 -0.02 1.12 15 18 H 0.07 1.28 8.14 -2.39 -0.02 1.26 15 19 H 0.05 1.21 8.14 -2.39 -0.02 1.19 15 20 H 0.06 1.59 8.10 -2.39 -0.02 1.57 15 21 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.08 2.67 8.14 -2.39 -0.02 2.65 15 23 H 0.07 2.49 8.04 -2.39 -0.02 2.47 15 24 H 0.00 0.11 7.51 -2.39 -0.02 0.09 15 25 H 0.01 0.45 7.38 -2.39 -0.02 0.43 15 26 H 0.25 14.98 8.31 -92.71 -0.77 14.21 15 27 H 0.04 1.58 8.07 -2.39 -0.02 1.56 15 28 H 0.02 0.88 8.01 -2.39 -0.02 0.86 15 Total: -1.00 -67.48 227.72 4.35 -63.13 By element: Atomic # 1 Polarization: -2.39 SS G_CDS: 1.10 Total: -1.29 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 3.35 Total: -14.17 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -2.13 Total: -96.95 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -67.48 4.35 -63.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108280825.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.369 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds