Wall clock time and date at job start Mon Mar 30 2020 02:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.91343 * 2 1 4 4 C 1.55157 * 111.00585 * 236.09897 * 2 1 3 5 5 C 1.54321 * 103.10033 * 206.50978 * 4 2 1 6 6 H 1.09008 * 109.88070 * 141.67817 * 5 4 2 7 7 C 1.52996 * 109.88413 * 262.68290 * 5 4 2 8 8 N 1.47018 * 107.27524 * 22.10414 * 5 4 2 9 9 C 1.36935 * 125.65222 * 181.09141 * 8 5 4 10 10 H 1.07999 * 119.99744 * 0.02562 * 9 8 5 11 11 C 1.38807 * 120.00286 * 179.97438 * 9 8 5 12 12 N 1.31624 * 120.00009 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00226 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47225 * 89.99850 * 13 11 9 15 15 H 1.48506 * 109.46932 * 210.00016 * 13 11 9 16 16 H 1.48495 * 109.47077 * 329.99806 * 13 11 9 17 17 C 1.47434 * 108.70129 * 1.05955 * 8 5 4 18 18 H 1.09008 * 109.47314 * 183.90550 * 1 2 3 19 19 H 1.08998 * 109.47412 * 303.90088 * 1 2 3 20 20 H 1.09000 * 109.47334 * 63.90151 * 1 2 3 21 21 H 1.09002 * 110.72219 * 88.05675 * 4 2 1 22 22 H 1.09003 * 110.71618 * 324.96287 * 4 2 1 23 23 H 1.09000 * 109.47081 * 60.00282 * 7 5 4 24 24 H 1.09003 * 109.47657 * 180.02562 * 7 5 4 25 25 H 1.08999 * 109.47429 * 300.00501 * 7 5 4 26 26 H 0.97001 * 120.00098 * 180.02562 * 12 11 9 27 27 H 1.09000 * 110.36877 * 94.71035 * 17 8 5 28 28 H 1.09001 * 110.36429 * 217.03387 * 17 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0861 -0.8079 -1.2022 5 6 3.4671 -1.2779 -0.6989 6 1 3.6625 -2.2926 -1.0460 7 6 4.5567 -0.3342 -1.2116 8 7 3.4299 -1.2473 0.7705 9 6 4.4679 -1.5727 1.6022 10 1 5.4151 -1.8840 1.1872 11 6 4.3031 -1.5013 2.9786 12 7 3.1489 -1.1214 3.4844 13 14 5.7194 -1.9445 4.1131 14 1 6.5256 -0.7300 4.3963 15 1 5.1822 -2.4899 5.3857 16 1 6.5763 -2.9660 3.4594 17 6 2.0900 -0.8074 1.2003 18 1 -0.3634 -1.0253 0.0700 19 1 -0.3634 0.5732 0.8529 20 1 -0.3634 0.4521 -0.9229 21 1 2.1921 -0.1699 -2.0797 22 1 1.4450 -1.6614 -1.4229 23 1 4.3651 0.6747 -0.8461 24 1 5.5288 -0.6724 -0.8528 25 1 4.5527 -0.3325 -2.3016 26 1 3.0338 -1.0712 4.4463 27 1 1.4546 -1.6695 1.4035 28 1 2.1642 -0.1732 2.0838 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125694034.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:52 Heat of formation + Delta-G solvation = -7.914676 kcal Electronic energy + Delta-G solvation = -10197.016404 eV Core-core repulsion = 8440.399041 eV Total energy + Delta-G solvation = -1756.617364 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.53197 -34.86325 -33.25456 -30.99632 -28.00710 -26.73468 -24.87269 -21.32521 -20.64397 -18.72990 -16.98992 -16.16106 -15.71180 -14.68732 -14.17359 -13.98998 -13.77924 -13.45326 -13.04960 -12.81207 -12.72680 -12.53792 -12.41633 -11.93781 -11.62068 -11.32119 -11.16811 -11.04299 -10.72698 -8.85466 -7.74210 -5.18140 1.45057 1.47387 1.55907 2.50613 3.34203 3.71273 3.96500 4.15322 4.20863 4.50772 4.67082 4.74120 4.79787 4.95525 5.00950 5.06832 5.17769 5.25635 5.35059 5.44431 5.51522 5.66502 5.76359 5.88745 6.35058 7.14517 7.84021 8.48777 9.27520 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.059125 B = 0.016905 C = 0.013767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.457617 B = 1655.904433 C = 2033.323728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.114 4.114 3 H 0.064 0.936 4 C -0.109 4.109 5 C 0.137 3.863 6 H 0.024 0.976 7 C -0.142 4.142 8 N -0.623 5.623 9 C -0.229 4.229 10 H 0.078 0.922 11 C -0.074 4.074 12 N -0.952 5.952 13 Si 0.979 3.021 14 H -0.285 1.285 15 H -0.294 1.294 16 H -0.271 1.271 17 C 0.160 3.840 18 H 0.048 0.952 19 H 0.050 0.950 20 H 0.077 0.923 21 H 0.092 0.908 22 H 0.068 0.932 23 H 0.040 0.960 24 H 0.033 0.967 25 H 0.076 0.924 26 H 0.245 0.755 27 H -0.018 1.018 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 2.030 -8.213 8.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.133 4.133 3 H 0.083 0.917 4 C -0.146 4.146 5 C 0.031 3.969 6 H 0.041 0.959 7 C -0.201 4.201 8 N -0.348 5.348 9 C -0.359 4.359 10 H 0.096 0.904 11 C -0.266 4.266 12 N -0.602 5.602 13 Si 0.807 3.193 14 H -0.212 1.212 15 H -0.221 1.221 16 H -0.196 1.196 17 C 0.035 3.965 18 H 0.067 0.933 19 H 0.069 0.931 20 H 0.096 0.904 21 H 0.111 0.889 22 H 0.087 0.913 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.000 1.000 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.098 1.992 -8.014 8.520 hybrid contribution 0.735 -0.394 1.053 1.344 sum -1.363 1.598 -6.960 7.270 Atomic orbital electron populations 1.21571 0.93135 1.01510 1.02102 1.22503 0.96519 0.98399 0.95924 0.91739 1.22613 0.94688 0.99679 0.97662 1.21238 0.95643 0.96321 0.83695 0.95868 1.22079 0.98465 0.99214 1.00324 1.44924 1.10321 1.78496 1.01028 1.19416 0.91970 1.36484 0.87986 0.90398 1.25642 0.99776 1.02990 0.98158 1.70093 1.24261 1.55365 1.10501 0.85061 0.78347 0.77800 0.78057 1.21222 1.22062 1.19595 1.21795 0.83933 0.94635 0.96114 0.93313 0.93075 0.90433 0.88919 0.91334 0.94081 0.94800 0.90539 0.94541 1.00030 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 9.31 71.98 0.67 -3.19 15 2 C -0.11 -4.37 3.65 -9.33 -0.03 -4.40 15 3 H 0.06 2.48 8.14 -2.39 -0.02 2.47 15 4 C -0.11 -3.73 5.95 31.78 0.19 -3.54 15 5 C 0.14 5.79 3.75 45.34 0.17 5.96 15 6 H 0.02 1.01 8.14 -2.38 -0.02 0.99 15 7 C -0.14 -5.25 9.09 71.98 0.65 -4.60 15 8 N -0.62 -33.33 3.14 -667.83 -2.10 -35.43 15 9 C -0.23 -13.29 9.82 84.03 0.82 -12.46 15 10 H 0.08 4.34 7.74 -2.91 -0.02 4.32 15 11 C -0.07 -4.33 5.49 84.86 0.47 -3.86 15 12 N -0.95 -58.73 10.09 21.65 0.22 -58.51 15 13 Si 0.98 47.06 29.55 68.60 2.03 49.08 15 14 H -0.29 -13.41 7.11 99.48 0.71 -12.70 15 15 H -0.29 -14.17 7.11 99.48 0.71 -13.46 15 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 17 C 0.16 8.27 5.37 86.93 0.47 8.74 15 18 H 0.05 1.51 8.08 -2.38 -0.02 1.49 15 19 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 20 H 0.08 1.88 8.14 -2.39 -0.02 1.86 15 21 H 0.09 2.56 7.83 -2.39 -0.02 2.54 15 22 H 0.07 2.21 8.04 -2.39 -0.02 2.20 15 23 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.03 1.32 7.92 -2.39 -0.02 1.30 15 25 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 26 H 0.24 14.65 8.31 -92.71 -0.77 13.88 15 27 H -0.02 -1.02 7.99 -2.39 -0.02 -1.04 15 28 H 0.07 3.88 5.87 -2.39 -0.01 3.86 15 Total: -1.00 -65.55 227.16 4.66 -60.90 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 1.10 Total: 1.32 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 3.41 Total: -17.36 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -1.88 Total: -93.94 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -65.55 4.66 -60.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125694034.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.985 kcal (2) G-P(sol) polarization free energy of solvation -65.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds