Wall clock time and date at job start Mon Mar 30 2020 02:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.52995 * 109.47341 * 120.00263 * 2 1 3 5 5 N 1.46504 * 109.47207 * 295.00042 * 4 2 1 6 6 C 1.36932 * 120.00481 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00404 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99799 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00139 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47192 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46979 * 120.00179 * 10 8 6 13 13 H 1.48499 * 109.47244 * 240.00027 * 10 8 6 14 14 C 1.52996 * 109.47138 * 240.00475 * 2 1 3 15 15 C 1.53000 * 117.49997 * 179.97438 * 14 2 1 16 16 C 1.53002 * 60.02940 * 252.49592 * 15 14 2 17 17 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 18 18 H 1.09006 * 109.47356 * 299.99703 * 1 2 3 19 19 H 1.09001 * 109.47494 * 59.99823 * 1 2 3 20 20 H 1.09003 * 109.47238 * 54.99814 * 4 2 1 21 21 H 1.08998 * 109.47246 * 175.00238 * 4 2 1 22 22 H 0.97007 * 119.99525 * 0.02562 * 5 4 2 23 23 H 0.97000 * 119.99634 * 179.97438 * 9 8 6 24 24 H 1.09008 * 115.56055 * 325.68508 * 14 2 1 25 25 H 1.09002 * 117.49833 * 359.97438 * 15 14 2 26 26 H 1.09002 * 117.49953 * 144.99738 * 15 14 2 27 27 H 1.09000 * 117.49996 * 107.50493 * 16 15 14 28 28 H 1.08999 * 117.49664 * 252.51862 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6524 0.0353 2.4424 6 6 2.0011 -0.4208 3.6855 7 1 2.5621 -1.3382 3.7864 8 6 1.6343 0.2963 4.8161 9 7 0.9510 1.4144 4.6931 10 14 2.1105 -0.3257 6.5119 11 1 2.8705 -1.5944 6.3784 12 1 2.9564 0.6883 7.1914 13 1 0.8839 -0.5648 7.3139 14 6 2.0399 -0.7211 -1.2493 15 6 3.5550 -0.8274 -1.4346 16 6 2.7419 0.1229 -2.3160 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 1.6054 -1.7198 1.2951 21 1 3.1263 -0.7994 1.2055 22 1 1.1482 0.8590 2.3518 23 1 0.6944 1.9153 5.4832 24 1 1.4309 -1.5583 -1.5906 25 1 4.1883 -0.3832 -0.6668 26 1 3.9430 -1.7349 -1.8974 27 1 2.8404 1.1920 -2.1278 28 1 2.5947 -0.1595 -3.3584 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132855782.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:14 Heat of formation + Delta-G solvation = 18.997251 kcal Electronic energy + Delta-G solvation = -9646.225939 eV Core-core repulsion = 7890.775564 eV Total energy + Delta-G solvation = -1755.450375 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.94465 -34.65096 -32.15915 -29.76738 -25.62827 -23.47161 -22.20105 -21.36947 -19.37948 -17.04069 -15.27950 -14.80280 -14.22166 -13.72159 -13.19083 -12.91072 -12.03995 -11.97686 -11.35107 -11.15314 -10.90678 -10.74138 -10.70907 -10.32232 -10.04835 -9.89553 -9.64197 -9.38149 -8.81014 -6.83931 -5.71150 -2.98719 3.46702 3.52098 3.54600 4.04633 4.64433 4.92368 5.18386 5.19646 5.50032 5.63949 5.78154 5.80497 5.88586 6.03185 6.13498 6.24473 6.32588 6.46009 6.52032 6.56142 6.80428 6.96246 7.06506 7.75976 8.48613 9.59314 10.19403 10.54155 11.52250 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.083837 B = 0.010260 C = 0.009645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.899644 B = 2728.398156 C = 2902.292082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 H 0.068 0.932 4 C 0.159 3.841 5 N -0.733 5.733 6 C -0.235 4.235 7 H 0.070 0.930 8 C -0.017 4.017 9 N -0.935 5.935 10 Si 0.906 3.094 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.292 1.292 14 C -0.138 4.138 15 C -0.181 4.181 16 C -0.185 4.185 17 H 0.049 0.951 18 H 0.065 0.935 19 H 0.043 0.957 20 H 0.018 0.982 21 H 0.019 0.981 22 H 0.383 0.617 23 H 0.254 0.746 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 -3.102 -10.994 11.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 H 0.087 0.913 4 C 0.032 3.968 5 N -0.378 5.378 6 C -0.367 4.367 7 H 0.088 0.912 8 C -0.212 4.212 9 N -0.585 5.585 10 Si 0.738 3.262 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.219 1.219 14 C -0.157 4.157 15 C -0.218 4.218 16 C -0.222 4.222 17 H 0.068 0.932 18 H 0.085 0.915 19 H 0.062 0.938 20 H 0.035 0.965 21 H 0.037 0.963 22 H 0.217 0.783 23 H 0.064 0.936 24 H 0.118 0.882 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.806 -3.213 -10.861 11.469 hybrid contribution 0.095 -0.045 0.932 0.937 sum 1.902 -3.258 -9.929 10.622 Atomic orbital electron populations 1.21728 0.94945 1.01450 1.01361 1.20908 0.95992 0.99022 0.92982 0.91337 1.20671 0.96417 0.94100 0.85609 1.42421 1.66851 1.27730 1.00761 1.19308 1.28289 1.05255 0.83814 0.91201 1.24731 1.01225 0.97468 0.97799 1.69674 1.43856 1.16691 1.28256 0.86116 0.77569 0.77794 0.84751 1.20583 1.21926 1.21915 1.22340 0.94529 1.01377 0.97421 1.22923 0.94628 1.01259 1.02969 1.22995 1.05724 0.97668 0.95857 0.93180 0.91550 0.93775 0.96456 0.96340 0.78299 0.93642 0.88231 0.88535 0.89329 0.89013 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.05 37.16 0.34 -1.98 15 2 C -0.07 -1.23 2.58 -90.63 -0.23 -1.46 15 3 H 0.07 1.25 7.90 -51.93 -0.41 0.84 15 4 C 0.16 3.41 5.56 -4.04 -0.02 3.39 15 5 N -0.73 -19.38 5.33 -59.91 -0.32 -19.70 15 6 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 15 7 H 0.07 1.97 7.83 -52.48 -0.41 1.56 15 8 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 15 9 N -0.94 -28.99 13.06 55.49 0.72 -28.27 15 10 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 15 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 15 13 H -0.29 -7.39 7.11 56.52 0.40 -6.98 15 14 C -0.14 -1.99 5.15 -90.59 -0.47 -2.46 15 15 C -0.18 -2.43 9.67 -26.73 -0.26 -2.69 15 16 C -0.19 -2.33 10.18 -26.69 -0.27 -2.61 15 17 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 18 H 0.07 1.27 7.18 -51.93 -0.37 0.90 15 19 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 20 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 21 H 0.02 0.40 7.13 -51.93 -0.37 0.03 15 22 H 0.38 10.55 6.85 -40.82 -0.28 10.27 15 23 H 0.25 7.56 8.31 -40.82 -0.34 7.22 15 24 H 0.10 1.35 8.11 -51.92 -0.42 0.92 15 25 H 0.10 1.40 7.59 -51.93 -0.39 1.01 15 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.09 1.16 8.05 -51.93 -0.42 0.74 15 28 H 0.09 0.95 8.14 -51.93 -0.42 0.52 15 LS Contribution 236.60 15.07 3.57 3.57 Total: -1.00 -30.57 236.60 -6.54 -37.11 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.33 Total: 4.77 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -1.16 Total: -15.36 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.41 Total: -47.97 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.57 -6.54 -37.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132855782.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.107 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds