Wall clock time and date at job start Mon Mar 30 2020 01:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47259 * 299.99850 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00216 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.53002 * 117.49654 * 243.73967 * 13 12 11 15 15 C 1.53012 * 117.49602 * 175.08431 * 13 12 11 16 16 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 17 17 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 18 18 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 19 19 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 20 20 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 21 21 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 22 22 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 23 23 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 24 24 H 1.08997 * 115.55341 * 29.41508 * 13 12 11 25 25 H 1.09000 * 117.49888 * 0.02562 * 14 13 12 26 26 H 1.08997 * 117.49823 * 145.01961 * 14 13 12 27 27 H 1.08998 * 117.49442 * 214.98050 * 15 13 12 28 28 H 1.08998 * 117.49828 * 0.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 6 1.8290 -6.1447 -0.0005 13 6 0.8348 -7.3076 -0.0018 14 6 0.8308 -8.2349 1.2151 15 6 1.4037 -8.7233 -0.1177 16 1 -0.4851 0.8400 -0.0004 17 1 0.3556 -2.3881 0.0002 18 1 2.6849 -3.7145 0.8894 19 1 2.6848 -3.7144 -0.8906 20 1 0.4370 -4.7622 0.8886 21 1 0.4376 -4.7618 -0.8913 22 1 2.4563 -6.2025 -0.8901 23 1 2.4551 -6.2024 0.8899 24 1 -0.1213 -7.1083 -0.4858 25 1 1.5362 -8.0162 2.0168 26 1 -0.1278 -8.6459 1.5316 27 1 0.8217 -9.4552 -0.6777 28 1 2.4863 -8.8261 -0.1926 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156996488.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:38 Heat of formation + Delta-G solvation = 14.909486 kcal Electronic energy + Delta-G solvation = -9268.329412 eV Core-core repulsion = 7512.701778 eV Total energy + Delta-G solvation = -1755.627634 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.68863 -35.06236 -32.42617 -29.99000 -25.82110 -22.92441 -22.36314 -20.75796 -20.23469 -16.98516 -15.56872 -14.76944 -14.53544 -14.13785 -13.21693 -13.06179 -12.37412 -11.69460 -11.53721 -11.43447 -10.87148 -10.83913 -10.53386 -10.46144 -10.16955 -9.87832 -9.73965 -9.57560 -8.82205 -6.85792 -5.71536 -2.99779 3.46493 3.51638 3.54324 3.84289 4.61157 4.75494 4.97987 4.98707 5.41712 5.58123 5.60924 5.65652 5.69169 5.83524 5.98190 6.10370 6.27152 6.33389 6.37144 6.46499 6.55082 6.96558 7.00665 7.75079 8.47934 9.58540 10.18480 10.53177 11.51764 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.144597 B = 0.007359 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 193.594570 B = 3804.140039 C = 3903.838934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.151 3.849 11 C -0.123 4.123 12 C -0.085 4.085 13 C -0.147 4.147 14 C -0.183 4.183 15 C -0.187 4.187 16 H 0.254 0.746 17 H 0.383 0.617 18 H 0.017 0.983 19 H 0.017 0.983 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 -13.648 0.403 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.213 4.213 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.024 3.976 11 C -0.161 4.161 12 C -0.123 4.123 13 C -0.165 4.165 14 C -0.220 4.220 15 C -0.224 4.224 16 H 0.064 0.936 17 H 0.217 0.783 18 H 0.034 0.966 19 H 0.035 0.965 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.340 -13.528 0.403 13.735 hybrid contribution 0.088 0.914 0.014 0.919 sum 2.428 -12.614 0.418 12.852 Atomic orbital electron populations 1.69674 1.05118 1.25460 1.58139 1.24755 0.95553 0.97713 1.03252 0.86100 0.78765 0.84103 0.77166 1.20565 1.21880 1.21877 1.19316 0.91095 0.84281 1.42177 0.91150 1.42407 1.05929 1.00171 1.89435 1.20665 0.93677 0.85708 0.97559 1.21701 0.98849 0.93516 1.02008 1.21126 0.96662 0.92736 1.01774 1.22420 1.01133 0.90976 1.01951 1.23028 1.02561 1.04649 0.91807 1.22965 1.00786 0.97790 1.00857 0.93610 0.78328 0.96564 0.96526 0.92016 0.92063 0.91744 0.92015 0.87873 0.88875 0.89201 0.89212 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.18 13.06 55.49 0.72 -28.45 15 2 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 15 3 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 15 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 15 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 15 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 15 8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 15 9 N -0.74 -19.80 5.60 -59.91 -0.34 -20.14 15 10 C 0.15 3.25 6.26 -4.04 -0.03 3.23 15 11 C -0.12 -2.12 5.29 -26.73 -0.14 -2.27 15 12 C -0.09 -1.19 5.49 -26.73 -0.15 -1.33 15 13 C -0.15 -1.81 5.73 -90.61 -0.52 -2.33 15 14 C -0.18 -2.02 10.18 -26.69 -0.27 -2.29 15 15 C -0.19 -1.97 10.26 -26.69 -0.27 -2.25 15 16 H 0.25 7.60 8.31 -40.82 -0.34 7.27 15 17 H 0.38 10.75 7.67 -40.82 -0.31 10.44 15 18 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 15 19 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 20 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 21 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.06 0.84 7.88 -51.93 -0.41 0.43 15 24 H 0.10 1.28 8.08 -51.93 -0.42 0.86 15 25 H 0.09 1.00 8.03 -51.93 -0.42 0.59 15 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 LS Contribution 241.16 15.07 3.63 3.63 Total: -1.00 -31.07 241.16 -7.11 -38.18 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.49 Total: 3.77 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.62 Total: -14.96 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.39 Total: -48.60 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.07 -7.11 -38.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156996488.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.094 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds