Wall clock time and date at job start Mon Mar 30 2020 01:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47259 * 299.99850 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00216 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.53002 * 117.49654 * 243.73967 * 13 12 11 15 15 C 1.53012 * 117.49602 * 175.08431 * 13 12 11 16 16 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 17 17 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 18 18 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 19 19 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 20 20 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 21 21 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 22 22 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 23 23 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 24 24 H 1.08997 * 115.55341 * 29.41508 * 13 12 11 25 25 H 1.09000 * 117.49888 * 0.02562 * 14 13 12 26 26 H 1.08997 * 117.49823 * 145.01961 * 14 13 12 27 27 H 1.08998 * 117.49442 * 214.98050 * 15 13 12 28 28 H 1.08998 * 117.49828 * 0.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 6 1.8290 -6.1447 -0.0005 13 6 0.8348 -7.3076 -0.0018 14 6 0.8308 -8.2349 1.2151 15 6 1.4037 -8.7233 -0.1177 16 1 -0.4851 0.8400 -0.0004 17 1 0.3556 -2.3881 0.0002 18 1 2.6849 -3.7145 0.8894 19 1 2.6848 -3.7144 -0.8906 20 1 0.4370 -4.7622 0.8886 21 1 0.4376 -4.7618 -0.8913 22 1 2.4563 -6.2025 -0.8901 23 1 2.4551 -6.2024 0.8899 24 1 -0.1213 -7.1083 -0.4858 25 1 1.5362 -8.0162 2.0168 26 1 -0.1278 -8.6459 1.5316 27 1 0.8217 -9.4552 -0.6777 28 1 2.4863 -8.8261 -0.1926 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156996488.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:38 Heat of formation + Delta-G solvation = -4.132579 kcal Electronic energy + Delta-G solvation = -9269.155138 eV Core-core repulsion = 7512.701778 eV Total energy + Delta-G solvation = -1756.453360 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.70619 -36.86945 -34.25734 -31.85160 -27.54395 -24.83434 -23.20428 -22.37090 -21.24898 -19.15319 -16.79019 -16.48369 -15.96317 -15.56115 -15.16035 -14.72331 -13.82256 -13.31714 -12.84709 -12.72771 -12.61748 -12.34420 -12.10520 -11.93286 -11.86232 -11.72700 -10.98706 -10.96295 -10.68630 -9.03202 -7.97391 -5.27378 1.46349 1.48070 1.58437 2.54785 2.96118 3.35960 3.66936 4.01719 4.07786 4.19556 4.28695 4.38219 4.53105 4.81926 4.82762 4.93130 4.98675 5.03464 5.11914 5.30589 5.31159 5.43963 5.46521 5.51796 6.25404 7.30635 8.06808 8.30539 9.26725 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.144597 B = 0.007359 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 193.594570 B = 3804.140039 C = 3903.838934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.251 4.251 8 H 0.076 0.924 9 N -0.751 5.751 10 C 0.148 3.852 11 C -0.110 4.110 12 C -0.076 4.076 13 C -0.166 4.166 14 C -0.183 4.183 15 C -0.174 4.174 16 H 0.252 0.748 17 H 0.373 0.627 18 H 0.019 0.981 19 H 0.020 0.980 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 -14.417 0.426 14.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.022 3.978 11 C -0.148 4.148 12 C -0.113 4.113 13 C -0.184 4.184 14 C -0.220 4.220 15 C -0.210 4.210 16 H 0.061 0.939 17 H 0.205 0.795 18 H 0.037 0.963 19 H 0.038 0.962 20 H 0.073 0.927 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.306 -14.333 0.427 14.715 hybrid contribution -0.192 1.093 0.009 1.109 sum 3.115 -13.240 0.436 13.609 Atomic orbital electron populations 1.69834 1.06732 1.26175 1.59454 1.25661 0.96518 1.01376 1.03493 0.84995 0.78164 0.79300 0.76823 1.18961 1.21767 1.21766 1.19733 0.91598 0.85477 1.41435 0.90613 1.42666 1.05724 1.01511 1.89479 1.20865 0.94393 0.85074 0.97486 1.21573 0.98013 0.93787 1.01453 1.21014 0.96714 0.91381 1.02238 1.22333 1.00893 0.91408 1.03792 1.23124 1.03223 1.03853 0.91814 1.23058 1.01404 0.96314 1.00274 0.93872 0.79517 0.96322 0.96225 0.92672 0.92527 0.91255 0.91569 0.88204 0.88710 0.88260 0.87847 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.22 13.06 21.65 0.28 -60.94 15 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 15 3 Si 0.98 47.16 29.55 68.60 2.03 49.19 15 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 15 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 15 6 H -0.29 -13.88 7.11 99.48 0.71 -13.17 15 7 C -0.25 -14.68 9.99 84.03 0.84 -13.84 15 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 15 9 N -0.75 -40.72 5.60 -343.45 -1.92 -42.64 15 10 C 0.15 6.30 6.26 86.38 0.54 6.84 15 11 C -0.11 -3.76 5.29 30.59 0.16 -3.60 15 12 C -0.08 -2.00 5.49 30.59 0.17 -1.83 15 13 C -0.17 -3.81 5.73 -10.79 -0.06 -3.87 15 14 C -0.18 -3.63 10.18 30.62 0.31 -3.32 15 15 C -0.17 -3.20 10.26 30.62 0.31 -2.89 15 16 H 0.25 15.26 8.31 -92.71 -0.77 14.49 15 17 H 0.37 21.33 7.67 -92.71 -0.71 20.62 15 18 H 0.02 0.79 8.14 -2.39 -0.02 0.77 15 19 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 20 H 0.05 1.94 8.14 -2.39 -0.02 1.92 15 21 H 0.06 1.96 8.14 -2.39 -0.02 1.94 15 22 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 23 H 0.07 1.68 7.88 -2.39 -0.02 1.66 15 24 H 0.10 2.35 8.08 -2.39 -0.02 2.33 15 25 H 0.09 1.84 8.03 -2.39 -0.02 1.82 15 26 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 27 H 0.10 1.64 8.14 -2.39 -0.02 1.62 15 28 H 0.10 1.70 8.14 -2.39 -0.02 1.68 15 Total: -1.00 -64.86 241.16 3.53 -61.33 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.40 Total: 19.76 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 2.74 Total: -26.70 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -1.64 Total: -103.58 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -64.86 3.53 -61.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156996488.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.198 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds