Wall clock time and date at job start Mon Mar 30 2020 02:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 5 5 C 1.36937 * 119.99777 * 275.00036 * 4 2 1 6 6 H 1.08003 * 119.99797 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00162 * 179.97438 * 5 4 2 8 8 N 1.31627 * 119.99952 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00459 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46792 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47087 * 119.99807 * 9 7 5 12 12 H 1.48500 * 109.47309 * 240.00393 * 9 7 5 13 13 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 14 14 C 1.53781 * 113.61476 * 157.49826 * 13 2 1 15 15 C 1.53779 * 87.07812 * 220.01608 * 14 13 2 16 16 C 1.53776 * 113.61550 * 59.99962 * 13 2 1 17 17 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 18 18 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 20 20 H 0.96990 * 120.00057 * 94.99539 * 4 2 1 21 21 H 0.96993 * 120.00181 * 179.97438 * 8 7 5 22 22 H 1.08997 * 112.84405 * 288.80059 * 13 2 1 23 23 H 1.08993 * 113.61731 * 334.56827 * 14 13 2 24 24 H 1.08999 * 113.61144 * 105.46995 * 14 13 2 25 25 H 1.08997 * 113.61529 * 270.88346 * 15 14 13 26 26 H 1.09006 * 113.69033 * 139.99076 * 15 14 13 27 27 H 1.09003 * 113.61248 * 254.53555 * 16 13 2 28 28 H 1.09003 * 113.61486 * 25.42978 * 16 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8927 1.0406 2.4241 7 6 2.6114 -0.6618 3.5092 8 7 2.9245 -1.9390 3.4502 9 14 2.7905 0.2702 5.1182 10 1 2.3765 1.6826 4.9207 11 1 1.9294 -0.3575 6.1523 12 1 4.2075 0.2264 5.5605 13 6 2.0400 -0.7213 -1.2493 14 6 3.4727 -0.3277 -1.6461 15 6 2.9921 -0.3574 -3.1066 16 6 1.5811 -0.0724 -2.5657 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 2.2490 -1.6317 1.1526 21 1 3.2479 -2.3962 4.2421 22 1 1.8759 -1.7982 -1.2128 23 1 3.7639 0.6647 -1.3023 24 1 4.2151 -1.0916 -1.4151 25 1 3.0896 -1.3351 -3.5785 26 1 3.3969 0.4497 -3.7173 27 1 0.7965 -0.6301 -3.0772 28 1 1.3552 0.9900 -2.4734 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164883052.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:37 Heat of formation + Delta-G solvation = -2.243233 kcal Electronic energy + Delta-G solvation = -9845.721327 eV Core-core repulsion = 8089.349895 eV Total energy + Delta-G solvation = -1756.371432 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.96549 -36.38698 -33.60065 -30.30543 -26.94563 -26.01671 -25.34487 -21.73194 -20.42099 -19.01746 -16.95640 -16.13008 -15.99828 -15.25174 -14.59630 -14.26671 -13.45225 -13.34441 -13.21766 -12.88008 -12.66794 -12.42638 -12.15092 -12.01993 -11.71770 -11.26499 -11.13733 -10.93769 -10.73351 -8.96758 -7.92888 -5.20267 1.46242 1.47193 1.57157 2.56834 3.40143 3.73560 3.87349 3.92719 4.08330 4.31517 4.53116 4.61964 4.89111 4.93344 4.95794 4.96459 5.08717 5.16345 5.20240 5.31156 5.46772 5.53841 5.58369 5.76840 6.30529 7.35273 8.14609 8.37215 9.31308 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.075734 B = 0.011797 C = 0.011166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.625110 B = 2372.925163 C = 2507.103723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.174 3.826 3 H 0.038 0.962 4 N -0.737 5.737 5 C -0.234 4.234 6 H 0.073 0.927 7 C -0.080 4.080 8 N -0.973 5.973 9 Si 0.971 3.029 10 H -0.267 1.267 11 H -0.294 1.294 12 H -0.293 1.293 13 C -0.118 4.118 14 C -0.137 4.137 15 C -0.129 4.129 16 C -0.120 4.120 17 H 0.073 0.927 18 H 0.039 0.961 19 H 0.030 0.970 20 H 0.370 0.630 21 H 0.250 0.750 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 4.256 -11.349 12.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.066 3.934 3 H 0.056 0.944 4 N -0.377 5.377 5 C -0.366 4.366 6 H 0.091 0.909 7 C -0.272 4.272 8 N -0.624 5.624 9 Si 0.801 3.199 10 H -0.191 1.191 11 H -0.221 1.221 12 H -0.221 1.221 13 C -0.137 4.137 14 C -0.175 4.175 15 C -0.166 4.166 16 C -0.158 4.158 17 H 0.091 0.909 18 H 0.058 0.942 19 H 0.049 0.951 20 H 0.201 0.799 21 H 0.058 0.942 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.127 4.431 -11.242 12.270 hybrid contribution 0.286 -0.227 1.334 1.383 sum -1.840 4.203 -9.908 10.919 Atomic orbital electron populations 1.22264 0.98030 1.00560 1.00457 1.20505 0.92576 0.94589 0.85694 0.94439 1.42651 1.78400 1.10241 1.06371 1.19673 1.34399 0.94070 0.88505 0.90932 1.25541 1.03278 0.96932 1.01445 1.69832 1.53045 1.10269 1.29264 0.85095 0.76797 0.78161 0.79887 1.19097 1.22116 1.22068 1.22761 0.97086 0.99392 0.94484 1.22870 0.96286 1.00826 0.97504 1.22784 0.96283 1.02495 0.95036 1.22844 0.97288 1.01148 0.94471 0.90865 0.94218 0.95072 0.79854 0.94156 0.90756 0.91224 0.93337 0.89602 0.90204 0.90381 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 9.29 71.98 0.67 -4.95 15 2 C 0.17 7.11 2.72 44.99 0.12 7.23 15 3 H 0.04 1.57 7.88 -2.39 -0.02 1.55 15 4 N -0.74 -38.59 5.12 -322.93 -1.65 -40.24 15 5 C -0.23 -13.44 9.93 84.03 0.83 -12.60 15 6 H 0.07 4.02 7.83 -2.91 -0.02 4.00 15 7 C -0.08 -4.74 5.50 84.86 0.47 -4.27 15 8 N -0.97 -61.20 13.06 21.65 0.28 -60.92 15 9 Si 0.97 47.30 29.55 68.60 2.03 49.33 15 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 11 H -0.29 -14.28 7.11 99.48 0.71 -13.57 15 12 H -0.29 -14.24 7.11 99.48 0.71 -13.53 15 13 C -0.12 -3.96 3.31 -10.27 -0.03 -4.00 15 14 C -0.14 -4.35 7.63 31.12 0.24 -4.12 15 15 C -0.13 -3.03 8.08 31.12 0.25 -2.78 15 16 C -0.12 -2.97 6.68 31.12 0.21 -2.76 15 17 H 0.07 2.13 7.45 -2.39 -0.02 2.11 15 18 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 19 H 0.03 1.22 8.14 -2.39 -0.02 1.21 15 20 H 0.37 20.89 7.80 -92.72 -0.72 20.16 15 21 H 0.25 15.17 8.31 -92.71 -0.77 14.40 15 22 H 0.07 2.63 8.14 -2.39 -0.02 2.61 15 23 H 0.07 2.30 7.96 -2.39 -0.02 2.28 15 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 26 H 0.08 1.60 8.14 -2.38 -0.02 1.58 15 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 15 28 H 0.09 2.02 8.10 -2.39 -0.02 2.00 15 Total: -1.00 -64.01 234.52 3.80 -60.20 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.39 Total: 19.87 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 2.75 Total: -28.24 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -1.37 Total: -101.16 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -64.01 3.80 -60.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164883052.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.961 kcal (2) G-P(sol) polarization free energy of solvation -64.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds