Wall clock time and date at job start Mon Mar 30 2020 02:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 115.54939 * 2 1 4 4 C 1.53000 * 117.49768 * 214.29912 * 2 1 3 5 5 C 1.52993 * 117.50214 * 145.67726 * 2 1 3 6 6 H 1.09004 * 117.49564 * 214.99817 * 5 2 1 7 7 C 1.52993 * 117.50037 * 359.97438 * 5 2 1 8 8 N 1.46906 * 109.47378 * 185.00223 * 7 5 2 9 9 C 1.46898 * 110.99888 * 180.02562 * 8 7 5 10 10 C 1.50704 * 109.47041 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00078 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00042 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99811 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99787 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47259 * 90.00455 * 14 12 10 16 16 H 1.48506 * 109.46535 * 210.00186 * 14 12 10 17 17 H 1.48501 * 109.46813 * 329.99840 * 14 12 10 18 18 H 1.09008 * 109.46649 * 274.32615 * 1 2 3 19 19 H 1.09000 * 109.47534 * 34.32531 * 1 2 3 20 20 H 1.08997 * 109.47340 * 154.32997 * 1 2 3 21 21 H 1.09005 * 117.50097 * 145.01612 * 4 2 1 22 22 H 1.09001 * 117.49985 * 359.97438 * 4 2 1 23 23 H 1.09004 * 109.46862 * 65.00326 * 7 5 2 24 24 H 1.09000 * 109.47250 * 305.00349 * 7 5 2 25 25 H 1.00904 * 110.99860 * 56.05050 * 8 7 5 26 26 H 1.08997 * 109.47334 * 299.99788 * 9 8 7 27 27 H 1.08995 * 109.47296 * 60.00089 * 9 8 7 28 28 H 0.97002 * 119.99396 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1212 -0.7648 5 6 2.2365 -1.1207 0.7652 6 1 3.1714 -0.8746 1.2686 7 6 1.3590 -2.1555 1.4723 8 7 2.2084 -3.0723 2.2444 9 6 1.3981 -4.0823 2.9381 10 6 2.3019 -5.0029 3.7171 11 1 3.3712 -4.8524 3.6990 12 6 1.7636 -6.0366 4.4537 13 7 0.4614 -6.2196 4.4761 14 14 2.8839 -7.1773 5.4199 15 1 3.0811 -6.6352 6.7882 16 1 2.2639 -8.5240 5.5056 17 1 4.1969 -7.2794 4.7337 18 1 -0.3633 0.0775 1.0248 19 1 -0.3634 0.8487 -0.5795 20 1 -0.3634 -0.9262 -0.4452 21 1 3.1715 -0.8755 -1.2682 22 1 1.6111 -1.8590 -1.2676 23 1 0.7945 -2.7208 0.7307 24 1 0.6680 -1.6471 2.1449 25 1 2.7896 -2.5653 2.8951 26 1 0.7072 -3.5877 3.6207 27 1 0.8343 -4.6609 2.2064 28 1 0.0827 -6.9466 4.9946 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166923206.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:42 Heat of formation + Delta-G solvation = 8.267938 kcal Electronic energy + Delta-G solvation = -9410.975266 eV Core-core repulsion = 7655.059633 eV Total energy + Delta-G solvation = -1755.915633 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.02930 -34.61754 -32.23053 -28.55644 -27.32735 -24.35492 -21.35923 -21.24811 -19.20319 -16.35263 -15.58705 -14.73111 -14.41648 -13.82824 -13.11839 -12.71458 -12.43242 -12.21740 -11.62585 -11.42171 -11.28928 -10.84535 -10.72653 -10.53793 -10.01718 -9.66402 -9.45920 -9.12402 -8.45484 -7.22499 -6.01032 -4.02887 3.33450 3.39192 3.44286 3.99026 4.45130 4.89414 4.97285 5.14953 5.34831 5.41412 5.68141 5.80190 5.90019 5.95453 6.04947 6.11608 6.17409 6.31986 6.43381 6.66054 7.28908 7.45155 7.81685 8.16021 8.44350 8.65850 9.06672 9.61972 11.10256 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.107258 B = 0.008451 C = 0.008055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 260.989854 B = 3312.280452 C = 3475.344702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.163 4.163 3 H 0.098 0.902 4 C -0.173 4.173 5 C -0.136 4.136 6 H 0.102 0.898 7 C 0.090 3.910 8 N -0.689 5.689 9 C 0.193 3.807 10 C -0.514 4.514 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.900 3.100 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 H 0.059 0.941 19 H 0.054 0.946 20 H 0.057 0.943 21 H 0.088 0.912 22 H 0.092 0.908 23 H 0.063 0.937 24 H 0.021 0.979 25 H 0.328 0.672 26 H -0.014 1.014 27 H 0.027 0.973 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 9.657 -6.526 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.182 4.182 3 H 0.116 0.884 4 C -0.210 4.210 5 C -0.155 4.155 6 H 0.120 0.880 7 C -0.040 4.040 8 N -0.320 5.320 9 C 0.066 3.934 10 C -0.552 4.552 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.727 3.273 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.197 1.197 18 H 0.078 0.922 19 H 0.073 0.927 20 H 0.076 0.924 21 H 0.106 0.894 22 H 0.111 0.889 23 H 0.082 0.918 24 H 0.039 0.961 25 H 0.144 0.856 26 H 0.003 0.997 27 H 0.045 0.955 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.159 9.108 -6.993 11.541 hybrid contribution 0.122 -0.150 1.244 1.259 sum 1.281 8.958 -5.750 10.722 Atomic orbital electron populations 1.21318 0.93153 1.01596 1.01772 1.22369 0.95333 0.94258 1.06236 0.88412 1.23087 1.01980 1.01068 0.94840 1.22417 1.00804 0.98480 0.93754 0.87997 1.21423 0.93789 0.92118 0.96626 1.60644 1.24230 1.15971 1.31111 1.19555 0.92330 0.89302 0.92195 1.21204 0.93793 1.12565 1.27655 0.91940 1.25000 0.95104 0.97693 0.96835 1.69970 1.10498 1.31727 1.41667 0.86473 0.80751 0.79936 0.80101 1.20732 1.21234 1.19745 0.92231 0.92721 0.92427 0.89381 0.88910 0.91830 0.96055 0.85599 0.99653 0.95479 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.19 37.16 0.34 -1.12 15 2 C -0.16 -2.10 6.41 -90.63 -0.58 -2.68 15 3 H 0.10 1.12 8.14 -51.93 -0.42 0.69 15 4 C -0.17 -2.34 9.82 -26.73 -0.26 -2.61 15 5 C -0.14 -2.09 5.95 -90.63 -0.54 -2.63 15 6 H 0.10 1.55 8.13 -51.93 -0.42 1.12 15 7 C 0.09 1.69 5.05 -3.82 -0.02 1.68 15 8 N -0.69 -15.53 6.49 -115.06 -0.75 -16.28 15 9 C 0.19 5.25 5.44 -4.97 -0.03 5.22 15 10 C -0.51 -14.96 9.32 -34.44 -0.32 -15.28 15 11 H 0.06 1.78 7.81 -52.49 -0.41 1.37 15 12 C 0.05 1.60 5.46 -17.82 -0.10 1.50 15 13 N -0.90 -27.38 13.29 55.43 0.74 -26.64 15 14 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 15 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 16 H -0.29 -6.93 7.11 56.52 0.40 -6.52 15 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 18 H 0.06 0.74 7.83 -51.92 -0.41 0.33 15 19 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.06 0.71 7.90 -51.93 -0.41 0.30 15 21 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.09 1.28 7.94 -51.93 -0.41 0.86 15 23 H 0.06 1.22 7.88 -51.93 -0.41 0.82 15 24 H 0.02 0.41 7.77 -51.93 -0.40 0.00 15 25 H 0.33 7.00 8.71 -39.29 -0.34 6.66 15 26 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 15 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 240.26 15.07 3.62 3.62 Total: -1.00 -30.25 240.26 -7.38 -37.63 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.46 Total: 0.59 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -1.51 Total: -15.91 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.01 Total: -42.92 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.25 -7.38 -37.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166923206.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.900 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds