Wall clock time and date at job start Mon Mar 30 2020 02:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 115.56452 * 2 1 4 4 C 1.53005 * 117.50047 * 145.68648 * 2 1 3 5 5 C 1.52998 * 117.50426 * 214.30927 * 2 1 3 6 6 H 1.09007 * 117.51348 * 359.97438 * 5 2 1 7 7 C 1.52996 * 117.50390 * 145.01777 * 5 2 1 8 8 N 1.46898 * 109.47525 * 185.01562 * 7 5 2 9 9 C 1.46904 * 111.00202 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46891 * 180.02562 * 9 8 7 11 11 H 1.07991 * 120.00449 * 359.72239 * 10 9 8 12 12 C 1.37885 * 119.99686 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 9 15 15 H 1.48493 * 109.47326 * 90.00142 * 14 12 10 16 16 H 1.48506 * 109.46545 * 209.99892 * 14 12 10 17 17 H 1.48498 * 109.47210 * 329.99603 * 14 12 10 18 18 H 1.09003 * 109.46861 * 205.68786 * 1 2 3 19 19 H 1.08996 * 109.47624 * 325.68798 * 1 2 3 20 20 H 1.09001 * 109.47440 * 85.69038 * 1 2 3 21 21 H 1.08993 * 117.49717 * 0.02562 * 4 2 1 22 22 H 1.09002 * 117.51565 * 214.97117 * 4 2 1 23 23 H 1.08999 * 109.47014 * 65.01591 * 7 5 2 24 24 H 1.09004 * 109.47341 * 305.02023 * 7 5 2 25 25 H 1.00906 * 110.99950 * 56.04961 * 8 7 5 26 26 H 1.08998 * 109.47046 * 59.99771 * 9 8 7 27 27 H 1.09001 * 109.47014 * 299.99971 * 9 8 7 28 28 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2365 -1.1209 -0.7649 6 1 1.6115 -1.8589 -1.2680 7 6 3.5490 -0.7759 -1.4714 8 7 4.0096 -1.9376 -2.2435 9 6 5.2709 -1.6426 -2.9365 10 6 5.7108 -2.8546 -3.7166 11 1 5.1156 -3.7555 -3.6957 12 6 6.8765 -2.8153 -4.4520 13 7 7.6015 -1.7184 -4.4771 14 14 7.4257 -4.3202 -5.4128 15 1 6.8530 -4.2695 -6.7819 16 1 8.9083 -4.3398 -5.4968 17 1 6.9527 -5.5474 -4.7234 18 1 -0.3633 -0.9261 0.4455 19 1 -0.3634 0.8488 0.5793 20 1 -0.3634 0.0772 -1.0247 21 1 1.6112 -1.8586 1.2680 22 1 3.1716 -0.8754 1.2683 23 1 4.3022 -0.5110 -0.7294 24 1 3.3891 0.0670 -2.1437 25 1 3.3018 -2.2428 -2.8946 26 1 6.0358 -1.3839 -2.2044 27 1 5.1233 -0.8056 -3.6190 28 1 8.4214 -1.6907 -4.9948 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166923308.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:43 Heat of formation + Delta-G solvation = 7.517062 kcal Electronic energy + Delta-G solvation = -9315.825671 eV Core-core repulsion = 7559.877478 eV Total energy + Delta-G solvation = -1755.948193 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.91995 -34.68769 -32.27775 -28.95069 -27.01116 -24.21104 -21.42892 -20.76636 -19.99843 -16.42760 -14.98151 -14.78555 -14.36806 -14.12581 -13.21103 -12.69260 -12.59442 -12.10528 -11.74800 -11.41315 -11.21104 -10.85775 -10.73841 -10.59831 -10.05417 -9.70859 -9.43597 -9.12264 -8.45640 -7.23185 -6.01131 -4.03009 3.33394 3.39116 3.44212 3.97429 4.44811 4.78528 5.09043 5.13905 5.34612 5.36563 5.65285 5.80566 5.82498 5.86424 6.02242 6.07855 6.16688 6.29657 6.39360 6.66885 7.28601 7.44981 7.81494 8.15734 8.43929 8.65494 9.06560 9.61778 11.10116 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.118915 B = 0.007830 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 235.404886 B = 3575.120836 C = 3658.381186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.165 4.165 3 H 0.100 0.900 4 C -0.172 4.172 5 C -0.134 4.134 6 H 0.102 0.898 7 C 0.088 3.912 8 N -0.689 5.689 9 C 0.192 3.808 10 C -0.514 4.514 11 H 0.062 0.938 12 C 0.054 3.946 13 N -0.899 5.899 14 Si 0.900 3.100 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 H 0.053 0.947 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.088 0.912 22 H 0.092 0.908 23 H 0.064 0.936 24 H 0.021 0.979 25 H 0.328 0.672 26 H 0.027 0.973 27 H -0.014 1.014 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.336 2.383 6.540 12.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.184 4.184 3 H 0.118 0.882 4 C -0.209 4.209 5 C -0.153 4.153 6 H 0.120 0.880 7 C -0.042 4.042 8 N -0.319 5.319 9 C 0.066 3.934 10 C -0.552 4.552 11 H 0.081 0.919 12 C -0.147 4.147 13 N -0.538 5.538 14 Si 0.728 3.272 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 H 0.073 0.927 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.107 0.893 22 H 0.110 0.890 23 H 0.082 0.918 24 H 0.039 0.961 25 H 0.144 0.856 26 H 0.045 0.955 27 H 0.004 0.996 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.837 2.161 7.007 12.270 hybrid contribution 0.172 -0.119 -1.235 1.252 sum -9.665 2.042 5.772 11.441 Atomic orbital electron populations 1.21325 0.93252 1.01478 1.01559 1.22402 0.94871 0.94848 1.06284 0.88206 1.23119 1.02137 1.00753 0.94875 1.22441 0.98767 1.00344 0.93723 0.87951 1.21464 0.93295 0.92747 0.96679 1.60641 1.07392 1.32754 1.31109 1.19562 0.85882 0.95769 0.92203 1.21203 1.07427 0.98926 1.27668 0.91930 1.25007 0.96484 0.96337 0.96845 1.69970 1.15204 1.26986 1.41678 0.86467 0.77638 0.83047 0.80075 1.20724 1.21235 1.19752 0.92750 0.92581 0.92423 0.89308 0.88995 0.91799 0.96120 0.85569 0.95471 0.99621 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.19 37.15 0.38 -0.89 15 2 C -0.17 -2.12 6.13 -90.62 -0.56 -2.68 15 3 H 0.10 1.26 8.14 -51.93 -0.42 0.84 15 4 C -0.17 -2.33 9.82 -26.73 -0.26 -2.59 15 5 C -0.13 -2.06 5.67 -90.62 -0.51 -2.58 15 6 H 0.10 1.56 8.13 -51.93 -0.42 1.14 15 7 C 0.09 1.66 5.97 -3.83 -0.02 1.64 15 8 N -0.69 -15.53 6.49 -115.06 -0.75 -16.28 15 9 C 0.19 5.25 5.44 -4.98 -0.03 5.22 15 10 C -0.51 -14.97 9.32 -34.44 -0.32 -15.29 15 11 H 0.06 1.79 7.81 -52.49 -0.41 1.38 15 12 C 0.05 1.59 5.46 -17.82 -0.10 1.49 15 13 N -0.90 -27.39 13.29 55.43 0.74 -26.65 15 14 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 15 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 17 H -0.27 -6.57 7.11 56.52 0.40 -6.16 15 18 H 0.05 0.55 7.90 -51.93 -0.41 0.14 15 19 H 0.06 0.52 8.14 -51.93 -0.42 0.09 15 20 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.09 1.09 8.05 -51.93 -0.42 0.67 15 22 H 0.09 1.25 8.03 -51.93 -0.42 0.84 15 23 H 0.06 1.23 7.87 -51.93 -0.41 0.82 15 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 25 H 0.33 7.01 8.71 -39.29 -0.34 6.67 15 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 27 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 15 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 LS Contribution 242.29 15.07 3.65 3.65 Total: -1.00 -30.26 242.29 -7.30 -37.56 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.50 Total: 0.38 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -1.42 Total: -15.68 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.01 Total: -42.93 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.26 -7.30 -37.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166923308.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.080 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds