Wall clock time and date at job start Mon Mar 30 2020 02:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 115.56452 * 2 1 4 4 C 1.53005 * 117.50047 * 145.68648 * 2 1 3 5 5 C 1.52998 * 117.50426 * 214.30927 * 2 1 3 6 6 H 1.09007 * 117.51348 * 359.97438 * 5 2 1 7 7 C 1.52996 * 117.50390 * 145.01777 * 5 2 1 8 8 N 1.46898 * 109.47525 * 185.01562 * 7 5 2 9 9 C 1.46904 * 111.00202 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46891 * 180.02562 * 9 8 7 11 11 H 1.07991 * 120.00449 * 359.72239 * 10 9 8 12 12 C 1.37885 * 119.99686 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 9 15 15 H 1.48493 * 109.47326 * 90.00142 * 14 12 10 16 16 H 1.48506 * 109.46545 * 209.99892 * 14 12 10 17 17 H 1.48498 * 109.47210 * 329.99603 * 14 12 10 18 18 H 1.09003 * 109.46861 * 205.68786 * 1 2 3 19 19 H 1.08996 * 109.47624 * 325.68798 * 1 2 3 20 20 H 1.09001 * 109.47440 * 85.69038 * 1 2 3 21 21 H 1.08993 * 117.49717 * 0.02562 * 4 2 1 22 22 H 1.09002 * 117.51565 * 214.97117 * 4 2 1 23 23 H 1.08999 * 109.47014 * 65.01591 * 7 5 2 24 24 H 1.09004 * 109.47341 * 305.02023 * 7 5 2 25 25 H 1.00906 * 110.99950 * 56.04961 * 8 7 5 26 26 H 1.08998 * 109.47046 * 59.99771 * 9 8 7 27 27 H 1.09001 * 109.47014 * 299.99971 * 9 8 7 28 28 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2365 -1.1209 -0.7649 6 1 1.6115 -1.8589 -1.2680 7 6 3.5490 -0.7759 -1.4714 8 7 4.0096 -1.9376 -2.2435 9 6 5.2709 -1.6426 -2.9365 10 6 5.7108 -2.8546 -3.7166 11 1 5.1156 -3.7555 -3.6957 12 6 6.8765 -2.8153 -4.4520 13 7 7.6015 -1.7184 -4.4771 14 14 7.4257 -4.3202 -5.4128 15 1 6.8530 -4.2695 -6.7819 16 1 8.9083 -4.3398 -5.4968 17 1 6.9527 -5.5474 -4.7234 18 1 -0.3633 -0.9261 0.4455 19 1 -0.3634 0.8488 0.5793 20 1 -0.3634 0.0772 -1.0247 21 1 1.6112 -1.8586 1.2680 22 1 3.1716 -0.8754 1.2683 23 1 4.3022 -0.5110 -0.7294 24 1 3.3891 0.0670 -2.1437 25 1 3.3018 -2.2428 -2.8946 26 1 6.0358 -1.3839 -2.2044 27 1 5.1233 -0.8056 -3.6190 28 1 8.4214 -1.6907 -4.9948 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166923308.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:43 Heat of formation + Delta-G solvation = -12.440316 kcal Electronic energy + Delta-G solvation = -9316.691088 eV Core-core repulsion = 7559.877478 eV Total energy + Delta-G solvation = -1756.813610 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.14398 -36.54282 -34.38750 -30.30807 -28.66631 -25.97818 -23.44356 -21.98461 -21.16889 -18.59146 -16.81145 -16.29302 -16.09577 -15.51680 -14.56583 -14.48684 -13.88579 -13.56086 -13.42006 -13.02651 -12.69590 -12.63542 -12.26048 -12.17626 -11.97534 -11.36943 -10.86527 -10.69112 -10.57428 -9.13449 -8.24357 -6.36344 1.40794 1.43137 1.55143 2.39317 2.84451 3.08696 3.49405 3.92109 3.99037 4.17418 4.43971 4.49544 4.66163 4.75272 4.95248 4.98427 4.99721 5.06521 5.20510 5.23528 5.33269 5.48356 5.59929 5.99348 6.42159 6.69806 6.86624 7.34846 8.87575 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.118915 B = 0.007830 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 235.404886 B = 3575.120836 C = 3658.381186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.148 4.148 3 H 0.101 0.899 4 C -0.168 4.168 5 C -0.154 4.154 6 H 0.105 0.895 7 C 0.090 3.910 8 N -0.687 5.687 9 C 0.206 3.794 10 C -0.538 4.538 11 H 0.066 0.934 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.978 3.022 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.264 1.264 18 H 0.061 0.939 19 H 0.073 0.927 20 H 0.059 0.941 21 H 0.106 0.894 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.017 0.983 25 H 0.336 0.664 26 H -0.002 1.002 27 H -0.039 1.039 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.390 1.537 6.726 13.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.166 4.166 3 H 0.119 0.881 4 C -0.205 4.205 5 C -0.172 4.172 6 H 0.123 0.877 7 C -0.039 4.039 8 N -0.318 5.318 9 C 0.078 3.922 10 C -0.576 4.576 11 H 0.084 0.916 12 C -0.199 4.199 13 N -0.575 5.575 14 Si 0.802 3.198 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.188 1.188 18 H 0.080 0.920 19 H 0.092 0.908 20 H 0.078 0.922 21 H 0.124 0.876 22 H 0.106 0.894 23 H 0.072 0.928 24 H 0.035 0.965 25 H 0.153 0.847 26 H 0.016 0.984 27 H -0.022 1.022 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.919 1.321 7.207 13.150 hybrid contribution 0.484 0.207 -1.248 1.354 sum -10.436 1.528 5.959 12.114 Atomic orbital electron populations 1.21357 0.91187 1.02723 1.02188 1.22520 0.96366 0.94148 1.03611 0.88090 1.23214 1.02485 1.01516 0.93281 1.22263 0.97447 1.02712 0.94811 0.87667 1.21479 0.95031 0.91349 0.96064 1.60528 1.06186 1.34486 1.30604 1.19232 0.87386 0.94564 0.91022 1.21552 1.08150 0.99471 1.28467 0.91615 1.26021 0.96338 0.99804 0.97728 1.70100 1.15690 1.29328 1.42414 0.85260 0.77249 0.78727 0.78614 1.19505 1.20591 1.18819 0.91969 0.90842 0.92189 0.87585 0.89411 0.92753 0.96522 0.84706 0.98359 1.02180 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 10.19 71.98 0.73 -1.42 15 2 C -0.15 -3.49 6.13 -10.80 -0.07 -3.55 15 3 H 0.10 2.37 8.14 -2.38 -0.02 2.35 15 4 C -0.17 -4.24 9.82 30.60 0.30 -3.94 15 5 C -0.15 -4.56 5.67 -10.80 -0.06 -4.62 15 6 H 0.11 3.07 8.13 -2.38 -0.02 3.05 15 7 C 0.09 3.43 5.97 86.30 0.51 3.95 15 8 N -0.69 -31.44 6.49 -517.94 -3.36 -34.80 15 9 C 0.21 11.58 5.44 85.56 0.47 12.04 15 10 C -0.54 -31.71 9.32 25.60 0.24 -31.47 15 11 H 0.07 3.74 7.81 -2.92 -0.02 3.72 15 12 C 0.00 -0.05 5.46 84.66 0.46 0.41 15 13 N -0.94 -57.70 13.29 21.45 0.28 -57.42 15 14 Si 0.98 44.93 29.54 68.60 2.03 46.96 15 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 17 H -0.26 -11.67 7.11 99.48 0.71 -10.97 15 18 H 0.06 1.05 7.90 -2.39 -0.02 1.04 15 19 H 0.07 1.11 8.14 -2.39 -0.02 1.09 15 20 H 0.06 1.09 8.14 -2.39 -0.02 1.07 15 21 H 0.11 2.32 8.05 -2.39 -0.02 2.30 15 22 H 0.09 2.29 8.03 -2.39 -0.02 2.27 15 23 H 0.05 2.14 7.87 -2.39 -0.02 2.12 15 24 H 0.02 0.64 8.14 -2.38 -0.02 0.63 15 25 H 0.34 14.41 8.71 -89.69 -0.78 13.63 15 26 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 15 27 H -0.04 -2.37 8.14 -2.39 -0.02 -2.39 15 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 15 Total: -1.00 -64.41 242.29 1.87 -62.53 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.33 Total: 11.32 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 2.59 Total: -28.60 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -3.08 Total: -92.22 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.41 1.87 -62.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166923308.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.094 kcal (2) G-P(sol) polarization free energy of solvation -64.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds