Wall clock time and date at job start Mon Mar 30 2020 02:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 115.55294 * 2 1 4 4 C 1.53070 * 117.53272 * 145.71888 * 2 1 3 5 5 C 1.53004 * 59.98777 * 107.46838 * 4 2 1 6 6 H 1.08992 * 117.50065 * 107.49497 * 5 4 2 7 7 C 1.52994 * 117.49925 * 252.50506 * 5 4 2 8 8 N 1.46899 * 109.46884 * 243.74053 * 7 5 4 9 9 C 1.46906 * 111.00346 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.47358 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 H 1.08993 * 109.46928 * 205.66633 * 1 2 3 19 19 H 1.08994 * 109.47071 * 325.66854 * 1 2 3 20 20 H 1.09004 * 109.46989 * 85.66696 * 1 2 3 21 21 H 1.09002 * 117.51740 * 359.97438 * 4 2 1 22 22 H 1.09002 * 117.49431 * 214.95090 * 4 2 1 23 23 H 1.08996 * 109.47710 * 123.74127 * 7 5 4 24 24 H 1.08999 * 109.47499 * 3.73979 * 7 5 4 25 25 H 1.00899 * 111.00470 * 303.95185 * 8 7 5 26 26 H 1.09001 * 109.46887 * 60.00315 * 9 8 7 27 27 H 1.08993 * 109.46896 * 299.99985 * 9 8 7 28 28 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2376 -1.1216 0.7645 5 6 2.2365 -1.1207 -0.7655 6 1 3.1711 -0.8745 -1.2693 7 6 1.3588 -2.1559 -1.4719 8 7 2.2082 -3.0738 -2.2426 9 6 1.3979 -4.0844 -2.9355 10 6 2.3015 -5.0053 -3.7142 11 1 3.3709 -4.8552 -3.6958 12 6 1.7632 -6.0401 -4.4492 13 7 0.4611 -6.2232 -4.4713 14 14 2.8834 -7.1821 -5.4138 15 1 2.0643 -8.2036 -6.1144 16 1 3.8245 -7.8551 -4.4828 17 1 3.6520 -6.3953 -6.4115 18 1 -0.3633 -0.9262 0.4451 19 1 -0.3633 0.8486 0.5796 20 1 -0.3633 0.0776 -1.0248 21 1 1.6132 -1.8595 1.2681 22 1 3.1730 -0.8756 1.2672 23 1 0.6683 -1.6481 -2.1452 24 1 0.7938 -2.7202 -0.7300 25 1 2.7898 -2.5678 -2.8935 26 1 0.7074 -3.5902 -3.6190 27 1 0.8335 -4.6619 -2.2035 28 1 -0.1206 -5.6305 -3.9701 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166923528.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:46 Heat of formation + Delta-G solvation = 4.701532 kcal Electronic energy + Delta-G solvation = -9438.703611 eV Core-core repulsion = 7682.633327 eV Total energy + Delta-G solvation = -1756.070284 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.10641 -34.86012 -32.36613 -28.57198 -27.07135 -24.08006 -21.71755 -21.32072 -19.29256 -16.78380 -15.74376 -14.69212 -14.06905 -13.69982 -13.52204 -12.97440 -12.47937 -12.19499 -11.66330 -11.51167 -11.33320 -10.88939 -10.72058 -10.50246 -10.06439 -9.74676 -9.56710 -8.61129 -8.39428 -7.36446 -6.36574 -4.05220 3.45853 3.48721 3.67207 3.91841 4.54505 4.81906 4.89134 5.07660 5.34780 5.40508 5.56524 5.72045 5.82367 5.87893 5.98275 6.04581 6.08504 6.20060 6.36934 6.56507 6.96343 7.16929 7.80694 8.17757 8.48918 8.59492 8.88514 9.66779 11.03326 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.107184 B = 0.008496 C = 0.008095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 261.169573 B = 3294.873471 C = 3458.183076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.162 4.162 3 H 0.099 0.901 4 C -0.172 4.172 5 C -0.137 4.137 6 H 0.102 0.898 7 C 0.089 3.911 8 N -0.682 5.682 9 C 0.183 3.817 10 C -0.595 4.595 11 H 0.056 0.944 12 C 0.014 3.986 13 N -0.914 5.914 14 Si 1.075 2.925 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.288 1.288 18 H 0.056 0.944 19 H 0.055 0.945 20 H 0.058 0.942 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.021 0.979 24 H 0.063 0.937 25 H 0.331 0.669 26 H -0.025 1.025 27 H 0.018 0.982 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 9.985 6.723 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.181 4.181 3 H 0.117 0.883 4 C -0.209 4.209 5 C -0.155 4.155 6 H 0.121 0.879 7 C -0.041 4.041 8 N -0.313 5.313 9 C 0.056 3.944 10 C -0.634 4.634 11 H 0.074 0.926 12 C -0.190 4.190 13 N -0.551 5.551 14 Si 0.903 3.097 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.215 1.215 18 H 0.075 0.925 19 H 0.074 0.926 20 H 0.077 0.923 21 H 0.111 0.889 22 H 0.107 0.893 23 H 0.039 0.961 24 H 0.081 0.919 25 H 0.147 0.853 26 H -0.007 1.007 27 H 0.036 0.964 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.717 8.236 6.260 10.486 hybrid contribution -0.378 1.925 0.392 2.001 sum 1.338 10.161 6.651 12.218 Atomic orbital electron populations 1.21318 0.93142 1.01636 1.01754 1.22389 0.95327 0.94280 1.06102 0.88307 1.23101 1.02025 1.01046 0.94729 1.22395 1.00816 0.98494 0.93835 0.87940 1.21447 0.93843 0.92164 0.96618 1.60540 1.23852 1.15845 1.31019 1.19660 0.92863 0.89986 0.91916 1.22014 0.94717 1.15349 1.31318 0.92564 1.25890 0.98253 0.97861 0.96979 1.70792 1.03404 1.39639 1.41219 0.83465 0.74501 0.75831 0.75944 1.20817 1.21342 1.21462 0.92468 0.92611 0.92270 0.88917 0.89278 0.96085 0.91860 0.85288 1.00702 0.96446 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.20 37.16 0.34 -1.11 15 2 C -0.16 -2.07 6.41 -90.58 -0.58 -2.65 15 3 H 0.10 1.12 8.14 -51.93 -0.42 0.70 15 4 C -0.17 -2.32 9.83 -26.69 -0.26 -2.59 15 5 C -0.14 -2.10 5.95 -90.62 -0.54 -2.64 15 6 H 0.10 1.56 8.13 -51.93 -0.42 1.14 15 7 C 0.09 1.67 5.05 -3.83 -0.02 1.65 15 8 N -0.68 -15.52 6.49 -115.06 -0.75 -16.26 15 9 C 0.18 4.97 4.75 -4.97 -0.02 4.95 15 10 C -0.60 -17.59 9.32 -34.44 -0.32 -17.91 15 11 H 0.06 1.64 7.81 -52.48 -0.41 1.23 15 12 C 0.01 0.40 5.46 -17.82 -0.10 0.31 15 13 N -0.91 -28.58 13.65 55.43 0.76 -27.82 15 14 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 15 15 H -0.28 -6.76 7.11 56.52 0.40 -6.35 15 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 18 H 0.06 0.70 7.90 -51.93 -0.41 0.29 15 19 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 20 H 0.06 0.73 7.84 -51.93 -0.41 0.32 15 21 H 0.09 1.27 7.94 -51.93 -0.41 0.86 15 22 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.02 0.40 7.77 -51.93 -0.40 -0.01 15 24 H 0.06 1.21 7.88 -51.93 -0.41 0.80 15 25 H 0.33 7.18 8.71 -39.29 -0.34 6.84 15 26 H -0.02 -0.69 8.01 -51.93 -0.42 -1.11 15 27 H 0.02 0.50 8.01 -51.93 -0.42 0.09 15 28 H 0.27 8.32 7.22 -40.82 -0.29 8.03 15 LS Contribution 238.97 15.07 3.60 3.60 Total: -1.00 -31.14 238.97 -7.38 -38.52 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.41 Total: 1.25 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -1.50 Total: -20.00 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.01 Total: -44.08 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -31.14 -7.38 -38.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166923528.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.219 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds