Wall clock time and date at job start Mon Mar 30 2020 02:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 115.55294 * 2 1 4 4 C 1.53070 * 117.53272 * 145.71888 * 2 1 3 5 5 C 1.53004 * 59.98777 * 107.46838 * 4 2 1 6 6 H 1.08992 * 117.50065 * 107.49497 * 5 4 2 7 7 C 1.52994 * 117.49925 * 252.50506 * 5 4 2 8 8 N 1.46899 * 109.46884 * 243.74053 * 7 5 4 9 9 C 1.46906 * 111.00346 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.47358 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 H 1.08993 * 109.46928 * 205.66633 * 1 2 3 19 19 H 1.08994 * 109.47071 * 325.66854 * 1 2 3 20 20 H 1.09004 * 109.46989 * 85.66696 * 1 2 3 21 21 H 1.09002 * 117.51740 * 359.97438 * 4 2 1 22 22 H 1.09002 * 117.49431 * 214.95090 * 4 2 1 23 23 H 1.08996 * 109.47710 * 123.74127 * 7 5 4 24 24 H 1.08999 * 109.47499 * 3.73979 * 7 5 4 25 25 H 1.00899 * 111.00470 * 303.95185 * 8 7 5 26 26 H 1.09001 * 109.46887 * 60.00315 * 9 8 7 27 27 H 1.08993 * 109.46896 * 299.99985 * 9 8 7 28 28 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2376 -1.1216 0.7645 5 6 2.2365 -1.1207 -0.7655 6 1 3.1711 -0.8745 -1.2693 7 6 1.3588 -2.1559 -1.4719 8 7 2.2082 -3.0738 -2.2426 9 6 1.3979 -4.0844 -2.9355 10 6 2.3015 -5.0053 -3.7142 11 1 3.3709 -4.8552 -3.6958 12 6 1.7632 -6.0401 -4.4492 13 7 0.4611 -6.2232 -4.4713 14 14 2.8834 -7.1821 -5.4138 15 1 2.0643 -8.2036 -6.1144 16 1 3.8245 -7.8551 -4.4828 17 1 3.6520 -6.3953 -6.4115 18 1 -0.3633 -0.9262 0.4451 19 1 -0.3633 0.8486 0.5796 20 1 -0.3633 0.0776 -1.0248 21 1 1.6132 -1.8595 1.2681 22 1 3.1730 -0.8756 1.2672 23 1 0.6683 -1.6481 -2.1452 24 1 0.7938 -2.7202 -0.7300 25 1 2.7898 -2.5678 -2.8935 26 1 0.7074 -3.5902 -3.6190 27 1 0.8335 -4.6619 -2.2035 28 1 -0.1206 -5.6305 -3.9701 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166923528.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:45 Heat of formation + Delta-G solvation = -16.124840 kcal Electronic energy + Delta-G solvation = -9439.606710 eV Core-core repulsion = 7682.633327 eV Total energy + Delta-G solvation = -1756.973383 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.34046 -36.77626 -34.47181 -29.80920 -28.80071 -26.01055 -23.81560 -22.45232 -20.54580 -18.94831 -16.97658 -16.49267 -15.78934 -15.51978 -15.19926 -14.14437 -14.00659 -13.78350 -13.44783 -13.05455 -12.87853 -12.52552 -12.38765 -12.05324 -11.90808 -10.96937 -10.81293 -10.68271 -10.60471 -9.27212 -8.74655 -6.45841 1.53565 1.62670 1.82624 2.54963 2.78583 3.10576 3.42333 3.74394 3.92201 4.09360 4.38001 4.41464 4.57843 4.62465 4.75592 4.88890 4.89116 4.93320 4.97341 5.13335 5.26721 5.40652 5.68596 5.97288 6.33772 6.50956 6.63631 7.37084 8.65167 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.107184 B = 0.008496 C = 0.008095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 261.169573 B = 3294.873471 C = 3458.183076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.141 4.141 3 H 0.123 0.877 4 C -0.168 4.168 5 C -0.159 4.159 6 H 0.106 0.894 7 C 0.093 3.907 8 N -0.683 5.683 9 C 0.193 3.807 10 C -0.614 4.614 11 H 0.057 0.943 12 C -0.037 4.037 13 N -0.936 5.936 14 Si 1.126 2.874 15 H -0.282 1.282 16 H -0.269 1.269 17 H -0.266 1.266 18 H 0.047 0.953 19 H 0.080 0.920 20 H 0.052 0.948 21 H 0.087 0.913 22 H 0.107 0.893 23 H 0.018 0.982 24 H 0.053 0.947 25 H 0.337 0.663 26 H -0.044 1.044 27 H -0.006 1.006 28 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 10.767 7.066 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 H 0.140 0.860 4 C -0.205 4.205 5 C -0.178 4.178 6 H 0.124 0.876 7 C -0.036 4.036 8 N -0.314 5.314 9 C 0.065 3.935 10 C -0.652 4.652 11 H 0.076 0.924 12 C -0.235 4.235 13 N -0.573 5.573 14 Si 0.946 3.054 15 H -0.207 1.207 16 H -0.194 1.194 17 H -0.191 1.191 18 H 0.067 0.933 19 H 0.099 0.901 20 H 0.071 0.929 21 H 0.105 0.895 22 H 0.126 0.874 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.154 0.846 26 H -0.026 1.026 27 H 0.012 0.988 28 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.908 9.057 6.629 11.594 hybrid contribution -0.788 1.743 0.344 1.944 sum 2.120 10.800 6.972 13.029 Atomic orbital electron populations 1.21377 0.92763 1.02330 1.01757 1.22531 0.95652 0.94535 1.03257 0.85956 1.23194 1.02966 1.01266 0.93102 1.22250 1.01047 0.99527 0.94975 0.87616 1.21438 0.94021 0.92177 0.95949 1.60443 1.23924 1.16506 1.30509 1.19381 0.92500 0.90674 0.90983 1.22385 0.95083 1.16030 1.31727 0.92426 1.27575 0.98767 0.99517 0.97598 1.70930 1.04361 1.39923 1.42061 0.82826 0.73049 0.74149 0.75341 1.20738 1.19448 1.19118 0.93338 0.90149 0.92908 0.89483 0.87427 0.96376 0.92842 0.84572 1.02643 0.98785 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.20 71.98 0.66 -2.08 15 2 C -0.14 -3.23 6.41 -10.77 -0.07 -3.30 15 3 H 0.12 2.29 8.14 -2.39 -0.02 2.27 15 4 C -0.17 -4.19 9.83 30.62 0.30 -3.89 15 5 C -0.16 -4.68 5.95 -10.79 -0.06 -4.74 15 6 H 0.11 3.04 8.13 -2.39 -0.02 3.02 15 7 C 0.09 3.51 5.05 86.30 0.44 3.95 15 8 N -0.68 -31.32 6.49 -517.95 -3.36 -34.68 15 9 C 0.19 10.76 4.75 85.56 0.41 11.17 15 10 C -0.61 -36.54 9.32 25.60 0.24 -36.30 15 11 H 0.06 3.35 7.81 -2.91 -0.02 3.32 15 12 C -0.04 -2.21 5.46 84.65 0.46 -1.75 15 13 N -0.94 -59.32 13.65 21.45 0.29 -59.02 15 14 Si 1.13 50.99 29.90 68.60 2.05 53.04 15 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 16 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 18 H 0.05 1.14 7.90 -2.39 -0.02 1.12 15 19 H 0.08 1.38 8.14 -2.39 -0.02 1.36 15 20 H 0.05 1.23 7.84 -2.38 -0.02 1.21 15 21 H 0.09 2.26 7.94 -2.39 -0.02 2.25 15 22 H 0.11 2.28 8.14 -2.39 -0.02 2.27 15 23 H 0.02 0.69 7.77 -2.39 -0.02 0.67 15 24 H 0.05 2.09 7.88 -2.39 -0.02 2.07 15 25 H 0.34 14.62 8.71 -89.69 -0.78 13.84 15 26 H -0.04 -2.58 8.01 -2.39 -0.02 -2.60 15 27 H -0.01 -0.35 8.01 -2.39 -0.02 -0.37 15 28 H 0.25 16.29 7.22 -92.71 -0.67 15.62 15 Total: -1.00 -66.34 238.97 1.79 -64.55 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.44 Total: 13.06 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 2.37 Total: -36.95 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -3.07 Total: -93.71 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.05 Total: 53.04 kcal Total: -66.34 1.79 -64.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166923528.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.424 kcal (2) G-P(sol) polarization free energy of solvation -66.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds