Wall clock time and date at job start Mon Mar 30 2020 01:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09000 * 110.43103 * 56.09410 * 10 9 7 12 12 C 1.54265 * 110.48978 * 293.55153 * 10 9 7 13 13 C 1.53871 * 106.59863 * 217.70731 * 12 10 9 14 14 C 1.54266 * 106.59887 * 0.02562 * 13 12 10 15 15 H 1.09000 * 110.48080 * 264.92934 * 14 13 12 16 16 N 1.46897 * 110.48794 * 142.41840 * 14 13 12 17 17 C 1.54886 * 104.19795 * 23.60441 * 14 13 12 18 18 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 20 20 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 21 21 H 1.09004 * 110.02819 * 336.99591 * 12 10 9 22 22 H 1.09004 * 110.03181 * 98.37201 * 12 10 9 23 23 H 1.08998 * 110.02837 * 119.28335 * 13 12 10 24 24 H 1.09000 * 110.03319 * 240.71294 * 13 12 10 25 25 H 1.00901 * 110.99908 * 61.45190 * 16 14 13 26 26 H 1.00899 * 111.00041 * 185.40090 * 16 14 13 27 27 H 1.08999 * 110.76016 * 203.74481 * 17 14 13 28 28 H 1.09006 * 110.75313 * 80.37656 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9259 -3.5771 0.8577 12 6 3.0350 -3.7031 -1.3142 13 6 3.2178 -5.1886 -1.6711 14 6 2.5323 -5.9984 -0.5513 15 1 3.2590 -6.2933 0.2057 16 7 1.8630 -7.1815 -1.1082 17 6 1.4946 -5.0164 0.0470 18 1 -0.4850 0.8400 0.0004 19 1 0.6245 -2.5529 0.8956 20 1 0.6244 -2.5609 -0.8844 21 1 2.4736 -3.1967 -2.0994 22 1 4.0071 -3.2272 -1.1844 23 1 2.7450 -5.4032 -2.6295 24 1 4.2788 -5.4345 -1.7143 25 1 2.5274 -7.7969 -1.5531 26 1 1.3389 -7.6688 -0.3970 27 1 1.2470 -5.2931 1.0718 28 1 0.5977 -4.9782 -0.5714 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205941701.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:32 Heat of formation + Delta-G solvation = -51.129700 kcal Electronic energy + Delta-G solvation = -9768.081313 eV Core-core repulsion = 8009.590005 eV Total energy + Delta-G solvation = -1758.491308 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.43508 -35.45705 -33.76381 -30.93701 -28.95886 -26.60925 -24.10734 -20.99883 -20.42679 -18.37509 -17.05644 -16.52070 -16.08962 -15.75611 -14.73006 -14.26999 -14.24732 -13.40611 -13.18153 -12.71123 -12.37367 -12.23702 -11.95722 -11.82826 -11.59623 -11.32940 -11.00311 -10.87275 -10.53705 -9.55604 -8.17679 -6.28037 1.39707 1.40031 1.53407 2.41917 3.15218 3.62734 3.76189 3.90944 4.22702 4.52722 4.63444 4.71199 4.84923 4.89221 5.09492 5.12514 5.27086 5.35051 5.41467 5.49973 5.57871 5.81763 5.89762 6.28927 6.35292 6.70890 6.88860 7.40880 8.94646 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.095758 B = 0.010814 C = 0.010138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.335066 B = 2588.659166 C = 2761.243385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.035 3.965 10 C -0.082 4.082 11 H 0.059 0.941 12 C -0.104 4.104 13 C -0.111 4.111 14 C 0.092 3.908 15 H 0.051 0.949 16 N -0.850 5.850 17 C -0.110 4.110 18 H 0.262 0.738 19 H -0.015 1.015 20 H -0.013 1.013 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.350 0.650 26 H 0.348 0.652 27 H 0.062 0.938 28 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.636 -10.436 -1.062 12.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.569 4.569 8 H 0.079 0.921 9 C -0.002 4.002 10 C -0.101 4.101 11 H 0.078 0.922 12 C -0.142 4.142 13 C -0.149 4.149 14 C -0.020 4.020 15 H 0.069 0.931 16 N -0.381 5.381 17 C -0.148 4.148 18 H 0.071 0.929 19 H 0.003 0.997 20 H 0.005 0.995 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.164 0.836 26 H 0.161 0.839 27 H 0.081 0.919 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.117 -9.821 -1.528 11.671 hybrid contribution 0.461 0.620 0.724 1.059 sum 6.579 -9.201 -0.805 11.339 Atomic orbital electron populations 1.70117 1.07878 1.27561 1.52252 1.25999 0.95728 1.03384 0.95003 0.85414 0.79150 0.78886 0.77697 1.18467 1.20504 1.20434 1.21692 0.93462 0.92138 1.49581 0.92129 1.19024 0.93930 0.93112 0.94168 1.21890 0.96813 0.94055 0.97344 0.92210 1.21964 0.99295 0.96135 0.96815 1.22157 1.00361 0.93675 0.98683 1.22091 0.94166 0.90621 0.95090 0.93140 1.58684 1.31643 1.11152 1.36647 1.22547 0.98088 0.94339 0.99855 0.92903 0.99679 0.99482 0.94056 0.92429 0.91494 0.90530 0.83644 0.83907 0.91946 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.67 13.29 21.45 0.28 -58.39 15 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 15 3 Si 0.96 45.19 29.54 68.60 2.03 47.22 15 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 15 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 7 C -0.53 -30.84 8.67 25.60 0.22 -30.62 15 8 H 0.06 3.37 7.69 -2.91 -0.02 3.35 15 9 C 0.03 1.90 4.36 29.85 0.13 2.03 15 10 C -0.08 -3.49 2.85 -9.71 -0.03 -3.52 15 11 H 0.06 2.50 8.14 -2.39 -0.02 2.48 15 12 C -0.10 -3.98 5.87 31.32 0.18 -3.80 15 13 C -0.11 -3.28 6.53 31.32 0.20 -3.08 15 14 C 0.09 2.57 3.99 45.99 0.18 2.75 15 15 H 0.05 1.28 8.14 -2.39 -0.02 1.26 15 16 N -0.85 -19.87 9.26 -164.24 -1.52 -21.39 15 17 C -0.11 -3.93 5.99 31.89 0.19 -3.74 15 18 H 0.26 15.35 8.31 -92.71 -0.77 14.58 15 19 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 15 20 H -0.01 -0.79 8.05 -2.38 -0.02 -0.81 15 21 H 0.04 1.77 7.77 -2.38 -0.02 1.75 15 22 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.07 2.00 8.04 -2.39 -0.02 1.98 15 24 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.35 6.43 9.07 -89.69 -0.81 5.61 15 26 H 0.35 7.02 9.06 -89.70 -0.81 6.20 15 27 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 28 H 0.05 2.13 8.06 -2.38 -0.02 2.12 15 Total: -1.00 -65.50 232.01 1.85 -63.65 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -0.49 Total: 8.66 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 1.55 Total: -39.75 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -1.24 Total: -79.77 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.50 1.85 -63.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205941701.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.525 kcal (2) G-P(sol) polarization free energy of solvation -65.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds