Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47384 * 2 1 4 4 N 1.46906 * 109.47260 * 119.99563 * 2 1 3 5 5 C 1.47962 * 110.99751 * 75.63804 * 4 2 1 6 6 C 1.53935 * 86.18030 * 137.58243 * 5 4 2 7 7 C 1.47956 * 110.99966 * 174.99597 * 4 2 1 8 8 H 1.08994 * 113.86348 * 336.74696 * 7 4 2 9 9 C 1.50706 * 113.75649 * 108.10523 * 7 4 2 10 10 H 1.07994 * 120.00053 * 356.06126 * 9 7 4 11 11 C 1.37878 * 119.99711 * 176.06629 * 9 7 4 12 12 N 1.31507 * 120.00165 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99610 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47101 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46942 * 119.99741 * 13 11 9 16 16 H 1.48495 * 109.47114 * 239.99650 * 13 11 9 17 17 H 1.09000 * 109.46964 * 300.00492 * 1 2 3 18 18 H 1.09001 * 109.46870 * 59.99896 * 1 2 3 19 19 H 1.08996 * 109.47388 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46964 * 239.99507 * 2 1 3 21 21 H 1.09000 * 109.47226 * 180.02562 * 3 2 1 22 22 H 1.09005 * 109.46723 * 299.99837 * 3 2 1 23 23 H 1.08993 * 109.47189 * 59.99522 * 3 2 1 24 24 H 1.09001 * 113.75877 * 23.26834 * 5 4 2 25 25 H 1.09000 * 113.85826 * 251.91369 * 5 4 2 26 26 H 1.08995 * 113.73457 * 221.91565 * 6 5 4 27 27 H 1.09002 * 113.72847 * 90.63659 * 6 5 4 28 28 H 0.97007 * 120.00122 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.8734 -2.1584 1.0623 6 6 3.2777 -2.2534 1.6857 7 6 3.4938 -0.8174 1.1750 8 1 3.9239 -0.7671 0.1748 9 6 4.1956 0.0791 2.1624 10 1 3.6258 0.7769 2.7579 11 6 5.5651 0.0082 2.3055 12 7 6.2588 -0.8420 1.5807 13 14 6.4350 1.1198 3.5290 14 1 5.4361 1.9780 4.2153 15 1 7.1466 0.2891 4.5335 16 1 7.4138 1.9754 2.8114 17 1 -0.3633 0.5139 0.8899 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 1.8933 -0.5139 -0.8899 21 1 3.1300 1.4424 -0.0005 22 1 1.6767 1.9563 -0.8901 23 1 1.6767 1.9563 0.8899 24 1 1.8279 -2.5003 0.0284 25 1 1.0866 -2.5832 1.6857 26 1 3.9214 -2.9910 1.2065 27 1 3.2705 -2.3360 2.7725 28 1 7.2223 -0.8921 1.6816 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211701836.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = 1.723170 kcal Electronic energy + Delta-G solvation = -10100.646627 eV Core-core repulsion = 8344.447191 eV Total energy + Delta-G solvation = -1756.199435 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.57328 -35.13248 -34.19481 -29.19279 -27.85702 -27.45212 -24.59584 -21.57025 -20.35640 -18.54260 -17.00414 -16.52380 -15.68533 -15.06345 -14.97842 -13.89841 -13.58740 -13.30724 -13.02270 -12.86007 -12.63909 -12.52628 -12.30676 -12.13711 -11.82622 -11.42212 -11.18459 -10.89166 -10.47074 -9.37328 -8.14330 -6.21534 1.40797 1.42343 1.55065 2.42718 3.13867 3.38554 4.05451 4.12313 4.21801 4.42016 4.52183 4.72401 4.78437 4.84650 4.90661 5.01269 5.07226 5.26482 5.28819 5.37679 5.39708 5.53682 5.69644 5.88606 6.38525 6.58784 6.89534 7.45536 8.95798 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.059553 B = 0.015638 C = 0.013606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.054161 B = 1790.085701 C = 2057.424610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.037 3.963 3 C -0.132 4.132 4 N -0.490 5.490 5 C 0.009 3.991 6 C -0.137 4.137 7 C 0.177 3.823 8 H 0.007 0.993 9 C -0.502 4.502 10 H 0.052 0.948 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.959 3.041 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.279 1.279 17 H 0.055 0.945 18 H 0.073 0.927 19 H 0.055 0.945 20 H 0.027 0.973 21 H 0.033 0.967 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 0.722 -2.327 8.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.189 4.189 4 N -0.214 5.214 5 C -0.120 4.120 6 C -0.175 4.175 7 C 0.069 3.931 8 H 0.025 0.975 9 C -0.540 4.540 10 H 0.070 0.930 11 C -0.188 4.188 12 N -0.566 5.566 13 Si 0.785 3.215 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.205 1.205 17 H 0.074 0.926 18 H 0.092 0.908 19 H 0.074 0.926 20 H 0.045 0.955 21 H 0.052 0.948 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.893 1.036 -1.842 8.171 hybrid contribution 1.263 0.007 -0.252 1.288 sum -6.630 1.043 -2.094 7.031 Atomic orbital electron populations 1.21667 0.92578 1.01934 1.02186 1.22195 0.97209 0.95875 0.91893 1.21668 1.00278 0.95457 1.01511 1.68622 1.11081 1.07029 1.34701 1.23802 0.97667 0.90907 0.99618 1.23290 0.95433 0.99087 0.99739 1.20653 0.84959 0.93067 0.94421 0.97538 1.21133 0.91716 1.20533 1.20644 0.92953 1.25748 0.98116 0.97046 0.97922 1.70079 1.07125 1.37647 1.41762 0.85484 0.78338 0.78800 0.78896 1.19272 1.20467 1.20494 0.92586 0.90819 0.92561 0.95481 0.94798 0.90821 0.93014 0.91762 0.88963 0.94100 0.91936 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.32 71.98 0.67 -2.98 15 2 C 0.04 1.40 2.27 44.91 0.10 1.50 15 3 C -0.13 -4.95 9.11 71.98 0.66 -4.29 15 4 N -0.49 -21.59 5.77 -862.95 -4.98 -26.57 15 5 C 0.01 0.34 7.35 86.41 0.64 0.97 15 6 C -0.14 -6.47 7.84 31.24 0.24 -6.23 15 7 C 0.18 9.24 1.97 44.27 0.09 9.32 15 8 H 0.01 0.40 7.85 -2.39 -0.02 0.38 15 9 C -0.50 -28.52 8.64 25.60 0.22 -28.30 15 10 H 0.05 3.03 7.81 -2.91 -0.02 3.00 15 11 C 0.01 0.58 5.46 84.66 0.46 1.04 15 12 N -0.93 -54.80 13.29 21.45 0.28 -54.51 15 13 Si 0.96 44.62 29.54 68.60 2.03 46.64 15 14 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 17 H 0.06 1.65 8.14 -2.39 -0.02 1.63 15 18 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 19 H 0.06 1.52 7.73 -2.39 -0.02 1.50 15 20 H 0.03 1.04 7.68 -2.39 -0.02 1.02 15 21 H 0.03 1.49 7.03 -2.39 -0.02 1.47 15 22 H 0.07 2.23 8.14 -2.38 -0.02 2.21 15 23 H 0.05 1.96 8.14 -2.39 -0.02 1.94 15 24 H 0.06 2.29 7.70 -2.39 -0.02 2.27 15 25 H 0.09 3.13 8.14 -2.39 -0.02 3.11 15 26 H 0.04 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.06 3.05 8.09 -2.39 -0.02 3.03 15 28 H 0.26 14.63 8.31 -92.70 -0.77 13.86 15 Total: -1.00 -61.20 232.92 1.51 -59.69 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.10 Total: 3.71 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 3.08 Total: -28.96 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -4.69 Total: -81.08 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -61.20 1.51 -59.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211701836.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.413 kcal (2) G-P(sol) polarization free energy of solvation -61.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds