Wall clock time and date at job start Mon Mar 30 2020 02:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47332 * 2 1 4 4 C 1.50703 * 109.46975 * 240.00061 * 2 1 3 5 5 H 1.07996 * 119.99965 * 239.99689 * 4 2 1 6 6 C 1.37878 * 119.99882 * 60.00250 * 4 2 1 7 7 N 1.31513 * 120.00121 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00013 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46900 * 59.99837 * 8 6 4 10 10 H 1.48494 * 109.47072 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46929 * 300.00015 * 8 6 4 12 12 N 1.46895 * 109.47172 * 120.00428 * 2 1 3 13 13 C 1.47482 * 110.99894 * 284.92869 * 12 2 1 14 14 C 1.53512 * 87.93302 * 221.29742 * 13 12 2 15 15 C 1.47476 * 110.99975 * 188.95960 * 12 2 1 16 16 H 1.08997 * 113.47795 * 253.46707 * 15 12 2 17 17 C 1.52993 * 113.47982 * 23.87313 * 15 12 2 18 18 H 1.08999 * 109.47134 * 293.88496 * 1 2 3 19 19 H 1.09004 * 109.46907 * 53.88799 * 1 2 3 20 20 H 1.09000 * 109.47150 * 173.88473 * 1 2 3 21 21 H 0.97001 * 120.00315 * 180.02562 * 7 6 4 22 22 H 1.09003 * 113.47643 * 336.06528 * 13 12 2 23 23 H 1.09002 * 113.47636 * 106.52595 * 13 12 2 24 24 H 1.08996 * 114.16996 * 272.37525 * 14 13 12 25 25 H 1.09002 * 114.34197 * 139.68667 * 14 13 12 26 26 H 1.09004 * 109.47420 * 53.95118 * 17 15 12 27 27 H 1.08996 * 109.47846 * 173.94865 * 17 15 12 28 28 H 1.08996 * 109.47363 * 293.95368 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0081 9 1 1.8280 -2.5197 -4.0083 10 1 1.8269 -0.4198 -5.2205 11 1 3.8075 -1.1189 -4.0078 12 7 2.0197 -0.6926 1.1993 13 6 1.8614 0.1513 2.3985 14 6 3.2487 -0.3266 2.8498 15 6 3.4781 -0.5293 1.3455 16 1 4.0418 -1.4320 1.1100 17 6 4.0264 0.7117 0.6385 18 1 -0.3633 0.4161 0.9396 19 1 -0.3633 0.6057 -0.8303 20 1 -0.3633 -1.0218 -0.1095 21 1 0.7081 1.1610 -3.4844 22 1 1.8204 1.2177 2.1767 23 1 1.0549 -0.1746 3.0554 24 1 3.2362 -1.2506 3.4278 25 1 3.8690 0.4512 3.2951 26 1 3.4796 1.5928 0.9747 27 1 5.0838 0.8279 0.8761 28 1 3.9064 0.5989 -0.4389 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226280999.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:23 Heat of formation + Delta-G solvation = 31.453225 kcal Electronic energy + Delta-G solvation = -10278.675098 eV Core-core repulsion = 8523.764854 eV Total energy + Delta-G solvation = -1754.910244 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.57065 -33.55953 -30.48904 -28.80535 -26.06085 -24.94708 -23.21611 -20.33510 -17.72315 -16.25724 -15.37190 -14.91396 -14.08220 -13.59967 -12.93681 -11.85043 -11.78925 -11.56142 -11.19966 -11.08206 -10.86810 -10.68884 -10.64187 -10.11532 -10.02615 -9.58564 -9.35553 -8.79472 -8.43514 -7.55565 -5.98831 -4.02069 3.33118 3.37453 3.40834 4.43263 5.05534 5.14844 5.33080 5.60024 6.00554 6.05946 6.09174 6.31284 6.37463 6.43017 6.57082 6.76709 6.88191 6.96922 7.10396 7.19612 7.46053 7.56240 7.85333 8.12213 8.34288 8.57039 9.03318 9.61463 11.08284 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.063046 B = 0.016746 C = 0.014821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.014518 B = 1671.642236 C = 1888.800114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.173 3.827 3 H 0.016 0.984 4 C -0.498 4.498 5 H 0.058 0.942 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.466 5.466 13 C -0.004 4.004 14 C -0.152 4.152 15 C 0.042 3.958 16 H 0.076 0.924 17 C -0.157 4.157 18 H 0.005 0.995 19 H 0.080 0.920 20 H 0.033 0.967 21 H 0.260 0.740 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -0.016 5.935 6.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.066 3.934 3 H 0.034 0.966 4 C -0.537 4.537 5 H 0.077 0.923 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.190 5.190 13 C -0.134 4.134 14 C -0.190 4.190 15 C -0.068 4.068 16 H 0.095 0.905 17 C -0.216 4.216 18 H 0.024 0.976 19 H 0.099 0.901 20 H 0.052 0.948 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.072 -0.561 5.706 6.505 hybrid contribution 0.503 0.411 -0.982 1.177 sum 3.575 -0.149 4.725 5.927 Atomic orbital electron populations 1.21711 0.97867 1.00307 0.98665 1.19825 0.92636 0.93303 0.87588 0.96608 1.20995 1.30775 1.12161 0.89764 0.92341 1.24924 0.95256 0.95094 0.98925 1.69894 1.36916 1.23032 1.23432 0.86619 0.79084 0.79835 0.82228 1.20277 1.21367 1.20343 1.69069 1.05675 1.40895 1.03311 1.23605 0.96756 0.97045 0.95948 1.23253 0.97626 1.00907 0.97176 1.22833 0.93067 0.97880 0.93000 0.90550 1.22037 0.98633 0.96859 1.04023 0.97631 0.90139 0.94813 0.92990 0.92469 0.91482 0.90101 0.91993 0.93440 0.93874 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.06 37.16 0.34 -2.91 15 2 C 0.17 4.47 1.31 -68.86 -0.09 4.38 15 3 H 0.02 0.44 5.64 -51.93 -0.29 0.15 15 4 C -0.50 -13.85 6.80 -34.44 -0.23 -14.08 15 5 H 0.06 1.65 7.76 -52.49 -0.41 1.24 15 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 15 7 N -0.89 -25.64 11.39 55.43 0.63 -25.01 15 8 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 15 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 12 N -0.47 -10.61 6.12 -229.92 -1.41 -12.02 15 13 C 0.00 -0.08 6.65 -7.55 -0.05 -0.13 15 14 C -0.15 -2.52 8.06 -26.20 -0.21 -2.73 15 15 C 0.04 0.84 4.27 -71.45 -0.31 0.53 15 16 H 0.08 1.52 8.14 -51.93 -0.42 1.10 15 17 C -0.16 -3.10 8.04 37.15 0.30 -2.80 15 18 H 0.00 0.11 7.57 -51.93 -0.39 -0.28 15 19 H 0.08 2.20 6.26 -51.93 -0.32 1.87 15 20 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 22 H 0.06 1.11 6.86 -51.93 -0.36 0.75 15 23 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 25 H 0.06 0.91 8.11 -51.93 -0.42 0.48 15 26 H 0.05 0.93 6.34 -51.93 -0.33 0.60 15 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 15 28 H 0.09 2.07 6.21 -51.93 -0.32 1.75 15 LS Contribution 221.61 15.07 3.34 3.34 Total: -1.00 -28.58 221.61 -6.90 -35.48 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -4.09 Total: -2.15 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -0.35 Total: -16.19 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.78 Total: -37.03 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -28.58 -6.90 -35.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226280999.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.931 kcal (2) G-P(sol) polarization free energy of solvation -28.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds