Wall clock time and date at job start Mon Mar 30 2020 02:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47332 * 2 1 4 4 C 1.50703 * 109.46975 * 240.00061 * 2 1 3 5 5 H 1.07996 * 119.99965 * 239.99689 * 4 2 1 6 6 C 1.37878 * 119.99882 * 60.00250 * 4 2 1 7 7 N 1.31513 * 120.00121 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00013 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46900 * 59.99837 * 8 6 4 10 10 H 1.48494 * 109.47072 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46929 * 300.00015 * 8 6 4 12 12 N 1.46895 * 109.47172 * 120.00428 * 2 1 3 13 13 C 1.47482 * 110.99894 * 284.92869 * 12 2 1 14 14 C 1.53512 * 87.93302 * 221.29742 * 13 12 2 15 15 C 1.47476 * 110.99975 * 188.95960 * 12 2 1 16 16 H 1.08997 * 113.47795 * 253.46707 * 15 12 2 17 17 C 1.52993 * 113.47982 * 23.87313 * 15 12 2 18 18 H 1.08999 * 109.47134 * 293.88496 * 1 2 3 19 19 H 1.09004 * 109.46907 * 53.88799 * 1 2 3 20 20 H 1.09000 * 109.47150 * 173.88473 * 1 2 3 21 21 H 0.97001 * 120.00315 * 180.02562 * 7 6 4 22 22 H 1.09003 * 113.47643 * 336.06528 * 13 12 2 23 23 H 1.09002 * 113.47636 * 106.52595 * 13 12 2 24 24 H 1.08996 * 114.16996 * 272.37525 * 14 13 12 25 25 H 1.09002 * 114.34197 * 139.68667 * 14 13 12 26 26 H 1.09004 * 109.47420 * 53.95118 * 17 15 12 27 27 H 1.08996 * 109.47846 * 173.94865 * 17 15 12 28 28 H 1.08996 * 109.47363 * 293.95368 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0081 9 1 1.8280 -2.5197 -4.0083 10 1 1.8269 -0.4198 -5.2205 11 1 3.8075 -1.1189 -4.0078 12 7 2.0197 -0.6926 1.1993 13 6 1.8614 0.1513 2.3985 14 6 3.2487 -0.3266 2.8498 15 6 3.4781 -0.5293 1.3455 16 1 4.0418 -1.4320 1.1100 17 6 4.0264 0.7117 0.6385 18 1 -0.3633 0.4161 0.9396 19 1 -0.3633 0.6057 -0.8303 20 1 -0.3633 -1.0218 -0.1095 21 1 0.7081 1.1610 -3.4844 22 1 1.8204 1.2177 2.1767 23 1 1.0549 -0.1746 3.0554 24 1 3.2362 -1.2506 3.4278 25 1 3.8690 0.4512 3.2951 26 1 3.4796 1.5928 0.9747 27 1 5.0838 0.8279 0.8761 28 1 3.9064 0.5989 -0.4389 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226280999.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:23 Heat of formation + Delta-G solvation = 11.769883 kcal Electronic energy + Delta-G solvation = -10279.528631 eV Core-core repulsion = 8523.764854 eV Total energy + Delta-G solvation = -1755.763777 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.19833 -35.59210 -32.47658 -30.41076 -27.82362 -27.01790 -24.78548 -22.20764 -19.36001 -18.29939 -17.10797 -16.68230 -15.88778 -15.31901 -14.87191 -13.71688 -13.36883 -13.20019 -13.04420 -12.85214 -12.75891 -12.54480 -12.29544 -12.14797 -11.90169 -11.22434 -11.09044 -10.75219 -10.53957 -9.33469 -8.11259 -6.21055 1.40166 1.41884 1.49452 2.41685 3.16673 3.49023 3.68160 4.13676 4.46456 4.53240 4.61095 4.80300 4.82861 4.85023 4.97968 5.02783 5.07973 5.17829 5.36956 5.45255 5.54695 5.59141 5.74589 6.12095 6.32569 6.63946 6.90701 7.46054 8.94854 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.063046 B = 0.016746 C = 0.014821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.014518 B = 1671.642236 C = 1888.800114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.180 3.820 3 H -0.005 1.005 4 C -0.510 4.510 5 H 0.047 0.953 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.491 5.491 13 C -0.008 4.008 14 C -0.122 4.122 15 C 0.030 3.970 16 H 0.073 0.927 17 C -0.148 4.148 18 H 0.025 0.975 19 H 0.057 0.943 20 H 0.022 0.978 21 H 0.261 0.739 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.400 -0.392 6.896 8.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.072 3.928 3 H 0.012 0.988 4 C -0.549 4.549 5 H 0.065 0.935 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.214 5.214 13 C -0.138 4.138 14 C -0.159 4.159 15 C -0.080 4.080 16 H 0.091 0.909 17 C -0.206 4.206 18 H 0.044 0.956 19 H 0.076 0.924 20 H 0.041 0.959 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.098 0.902 24 H 0.117 0.883 25 H 0.109 0.891 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.985 -0.940 6.682 7.836 hybrid contribution 0.228 0.532 -1.231 1.360 sum 4.213 -0.408 5.451 6.901 Atomic orbital electron populations 1.21565 0.98116 0.99181 0.98782 1.19605 0.92387 0.92171 0.88621 0.98765 1.21190 1.30694 1.11890 0.91106 0.93456 1.25654 0.95456 0.95782 1.01680 1.70009 1.37759 1.24124 1.24011 0.85667 0.78806 0.78648 0.78858 1.20074 1.20794 1.19606 1.68999 1.07727 1.41532 1.03146 1.23689 0.99128 0.96380 0.94563 1.23154 0.95636 1.02402 0.94751 1.22996 0.91379 0.97761 0.95862 0.90900 1.21896 1.00688 0.96673 1.01346 0.95569 0.92402 0.95856 0.92972 0.92972 0.90190 0.88282 0.89120 0.93853 0.90642 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 9.06 71.98 0.65 -5.43 15 2 C 0.18 9.34 1.31 44.17 0.06 9.39 15 3 H -0.01 -0.29 5.64 -2.39 -0.01 -0.30 15 4 C -0.51 -28.70 6.80 25.60 0.17 -28.52 15 5 H 0.05 2.70 7.76 -2.91 -0.02 2.68 15 6 C 0.01 0.72 5.30 84.65 0.45 1.17 15 7 N -0.92 -53.49 11.39 21.45 0.24 -53.25 15 8 Si 0.95 44.43 29.54 68.60 2.03 46.46 15 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 12 N -0.49 -21.87 6.12 -881.33 -5.39 -27.26 15 13 C -0.01 -0.30 6.65 83.57 0.56 0.25 15 14 C -0.12 -3.61 8.06 30.94 0.25 -3.36 15 15 C 0.03 1.13 4.27 42.18 0.18 1.31 15 16 H 0.07 2.80 8.14 -2.39 -0.02 2.78 15 17 C -0.15 -5.67 8.04 71.98 0.58 -5.10 15 18 H 0.03 1.18 7.57 -2.39 -0.02 1.16 15 19 H 0.06 3.21 6.26 -2.38 -0.01 3.20 15 20 H 0.02 1.18 8.14 -2.39 -0.02 1.16 15 21 H 0.26 14.49 8.31 -92.71 -0.77 13.72 15 22 H 0.05 1.93 6.86 -2.39 -0.02 1.92 15 23 H 0.08 2.64 8.14 -2.39 -0.02 2.62 15 24 H 0.10 2.62 8.14 -2.39 -0.02 2.60 15 25 H 0.09 2.22 8.11 -2.39 -0.02 2.20 15 26 H 0.04 1.66 6.34 -2.39 -0.02 1.64 15 27 H 0.07 2.34 8.14 -2.39 -0.02 2.32 15 28 H 0.05 2.36 6.21 -2.39 -0.01 2.34 15 Total: -1.00 -60.74 221.61 0.89 -59.84 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.12 Total: 4.48 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 2.90 Total: -30.27 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -5.15 Total: -80.51 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -60.74 0.89 -59.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226280999.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.614 kcal (2) G-P(sol) polarization free energy of solvation -60.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds