Wall clock time and date at job start Mon Mar 30 2020 01:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 115.54879 * 2 1 4 4 N 1.46905 * 109.47234 * 34.32865 * 3 2 1 5 5 C 1.46902 * 110.99800 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46577 * 180.02562 * 5 4 3 7 7 H 1.07995 * 120.00167 * 359.72326 * 6 5 4 8 8 C 1.37879 * 119.99394 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99350 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00608 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47353 * 89.99430 * 10 8 6 12 12 H 1.48494 * 109.47031 * 209.99977 * 10 8 6 13 13 H 1.48504 * 109.46680 * 329.99678 * 10 8 6 14 14 C 1.53003 * 117.51845 * 145.69593 * 2 1 3 15 15 C 1.53003 * 117.50059 * 214.33007 * 2 1 3 16 16 H 1.08997 * 109.47109 * 85.58373 * 1 2 3 17 17 H 1.08997 * 109.46713 * 205.58452 * 1 2 3 18 18 H 1.09000 * 109.47218 * 325.58215 * 1 2 3 19 19 H 1.08993 * 109.47319 * 274.32821 * 3 2 1 20 20 H 1.09002 * 109.47089 * 154.32876 * 3 2 1 21 21 H 1.00891 * 110.99988 * 303.95285 * 4 3 2 22 22 H 1.09000 * 109.47263 * 60.00269 * 5 4 3 23 23 H 1.09001 * 109.47582 * 299.99548 * 5 4 3 24 24 H 0.97005 * 119.99656 * 180.02562 * 9 8 6 25 25 H 1.08997 * 117.50266 * 214.96773 * 14 2 1 26 26 H 1.08995 * 117.49921 * 359.97438 * 14 2 1 27 27 H 1.08989 * 117.49844 * 359.97438 * 15 2 1 28 28 H 1.09002 * 117.49827 * 145.00061 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.3691 2.3155 0.7811 5 6 1.9736 3.6542 0.8036 6 6 1.1059 4.5835 1.6127 7 1 0.1942 4.2175 2.0611 8 6 1.4730 5.9026 1.7752 9 7 0.7154 6.7137 2.4808 10 14 3.0453 6.5380 0.9919 11 1 2.7487 7.0471 -0.3712 12 1 3.6019 7.6372 1.8207 13 1 4.0352 5.4345 0.9037 14 6 2.2369 -1.1209 0.7647 15 6 2.2365 -1.1207 -0.7654 16 1 -0.3633 0.0791 -1.0246 17 1 -0.3633 -0.9269 0.4438 18 1 -0.3633 0.8478 0.5809 19 1 2.2766 1.7417 -1.0247 20 1 3.1822 1.3087 0.4452 21 1 0.4251 2.3507 0.4270 22 1 2.0592 4.0315 -0.2154 23 1 2.9643 3.5980 1.2547 24 1 0.9735 7.6418 2.5948 25 1 3.1721 -0.8750 1.2677 26 1 1.6120 -1.8583 1.2684 27 1 1.6114 -1.8582 -1.2685 28 1 3.1714 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226403665.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:22 Heat of formation + Delta-G solvation = -1.709459 kcal Electronic energy + Delta-G solvation = -9573.075105 eV Core-core repulsion = 7816.726820 eV Total energy + Delta-G solvation = -1756.348285 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.40344 -36.40826 -34.36190 -30.28145 -28.94280 -26.03673 -23.28583 -23.01559 -19.98355 -18.86101 -17.05740 -16.20557 -16.09656 -15.61584 -14.77342 -14.36805 -14.16741 -13.79974 -13.32378 -12.97804 -12.68692 -12.55280 -12.23681 -11.84251 -11.83564 -11.54629 -10.96818 -10.84700 -10.51631 -9.13143 -8.31813 -6.36689 1.33426 1.35783 1.47288 2.32964 2.88180 3.01982 3.51471 3.89340 3.96730 4.17477 4.23623 4.63008 4.67717 4.79546 4.81870 4.97956 5.03824 5.07295 5.08094 5.22109 5.32057 5.45668 5.53169 5.94459 6.54784 6.64504 6.74941 7.28520 8.85024 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.082693 B = 0.010235 C = 0.009524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.518955 B = 2734.971980 C = 2939.235119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.139 4.139 3 C 0.092 3.908 4 N -0.687 5.687 5 C 0.173 3.827 6 C -0.531 4.531 7 H 0.037 0.963 8 C 0.008 3.992 9 N -0.947 5.947 10 Si 0.953 3.047 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.252 1.252 14 C -0.172 4.172 15 C -0.161 4.161 16 H 0.063 0.937 17 H 0.068 0.932 18 H 0.055 0.945 19 H 0.026 0.974 20 H 0.062 0.938 21 H 0.339 0.661 22 H -0.015 1.015 23 H 0.024 0.976 24 H 0.268 0.732 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.223 -13.141 -7.597 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.140 4.140 3 C -0.037 4.037 4 N -0.320 5.320 5 C 0.044 3.956 6 C -0.569 4.569 7 H 0.055 0.945 8 C -0.189 4.189 9 N -0.587 5.587 10 Si 0.776 3.224 11 H -0.190 1.190 12 H -0.204 1.204 13 H -0.176 1.176 14 C -0.209 4.209 15 C -0.198 4.198 16 H 0.082 0.918 17 H 0.087 0.913 18 H 0.074 0.926 19 H 0.044 0.956 20 H 0.081 0.919 21 H 0.158 0.842 22 H 0.003 0.997 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.120 0.880 27 H 0.128 0.872 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.478 -13.149 -6.930 15.523 hybrid contribution 0.190 1.049 -0.782 1.322 sum 4.668 -12.100 -7.713 15.089 Atomic orbital electron populations 1.21316 0.91802 1.02397 1.01845 1.21450 0.95472 0.90014 1.07044 1.21481 0.96440 0.91014 0.94755 1.60470 1.05742 1.08895 1.56883 1.19771 0.95263 0.86727 0.93845 1.21341 1.08550 0.94596 1.32414 0.94452 1.25895 1.00768 0.96839 0.95433 1.70054 1.40496 1.06144 1.42008 0.85627 0.79497 0.78499 0.78752 1.18976 1.20403 1.17615 1.23161 1.02277 1.00697 0.94720 1.23109 1.02402 1.00160 0.94135 0.91812 0.91341 0.92630 0.95601 0.91909 0.84162 0.99733 0.95843 0.92260 0.89365 0.88005 0.87231 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.53 71.98 0.69 -2.36 15 2 C -0.14 -3.83 2.57 -52.18 -0.13 -3.97 15 3 C 0.09 3.15 5.87 86.30 0.51 3.66 15 4 N -0.69 -29.39 6.10 -517.91 -3.16 -32.55 15 5 C 0.17 8.58 4.51 85.56 0.39 8.96 15 6 C -0.53 -31.69 9.87 25.60 0.25 -31.44 15 7 H 0.04 2.46 8.06 -2.91 -0.02 2.44 15 8 C 0.01 0.49 5.47 84.66 0.46 0.95 15 9 N -0.95 -60.01 13.96 21.45 0.30 -59.71 15 10 Si 0.95 44.79 27.47 68.60 1.88 46.67 15 11 H -0.26 -11.86 7.11 99.48 0.71 -11.15 15 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 13 H -0.25 -11.17 6.54 99.48 0.65 -10.52 15 14 C -0.17 -4.10 9.82 30.60 0.30 -3.80 15 15 C -0.16 -3.40 9.97 30.60 0.31 -3.10 15 16 H 0.06 1.49 8.14 -2.39 -0.02 1.47 15 17 H 0.07 1.54 7.90 -2.39 -0.02 1.53 15 18 H 0.05 1.71 5.84 -2.39 -0.01 1.70 15 19 H 0.03 0.86 8.14 -2.39 -0.02 0.84 15 20 H 0.06 2.14 7.90 -2.39 -0.02 2.12 15 21 H 0.34 14.12 6.54 -89.70 -0.59 13.53 15 22 H -0.01 -0.72 7.57 -2.39 -0.02 -0.74 15 23 H 0.02 1.18 7.20 -2.39 -0.02 1.16 15 24 H 0.27 15.76 8.31 -92.70 -0.77 14.99 15 25 H 0.09 2.16 8.05 -2.39 -0.02 2.14 15 26 H 0.10 2.17 8.05 -2.39 -0.02 2.15 15 27 H 0.11 1.92 8.14 -2.39 -0.02 1.90 15 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 15 Total: -1.00 -65.47 233.87 2.27 -63.20 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.48 Total: 13.48 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 2.76 Total: -31.09 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -2.86 Total: -92.26 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -65.47 2.27 -63.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226403665.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.489 kcal (2) G-P(sol) polarization free energy of solvation -65.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds