Wall clock time and date at job start Mon Mar 30 2020 01:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 N 1.46497 * 109.47191 * 240.00259 * 2 1 3 5 5 C 1.36938 * 120.00192 * 59.99831 * 4 2 1 6 6 H 1.08002 * 119.99712 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00024 * 180.02562 * 5 4 2 8 8 N 1.31627 * 120.00107 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00232 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46971 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47099 * 119.99548 * 9 7 5 12 12 H 1.48498 * 109.47269 * 239.99908 * 9 7 5 13 13 C 1.53003 * 109.47267 * 119.99875 * 2 1 3 14 14 C 1.53001 * 117.51964 * 236.28555 * 13 2 1 15 15 C 1.52999 * 60.00190 * 107.47982 * 14 13 2 16 16 H 1.09004 * 109.47051 * 299.99965 * 1 2 3 17 17 H 1.08991 * 109.47188 * 59.99959 * 1 2 3 18 18 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47344 * 180.02562 * 3 2 1 20 20 H 1.09003 * 109.47562 * 299.99950 * 3 2 1 21 21 H 1.09004 * 109.47159 * 60.00101 * 3 2 1 22 22 H 0.97003 * 119.99690 * 239.99696 * 4 2 1 23 23 H 0.96999 * 120.00118 * 180.02562 * 8 7 5 24 24 H 1.09002 * 115.54973 * 90.58338 * 13 2 1 25 25 H 1.09001 * 117.49733 * 214.97413 * 14 13 2 26 26 H 1.08995 * 117.49577 * 359.97438 * 14 13 2 27 27 H 1.09004 * 117.50150 * 252.51496 * 15 14 13 28 28 H 1.09004 * 117.49681 * 107.48417 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.6875 -0.2227 -2.4399 6 1 1.0662 0.6552 -2.5390 7 6 2.1498 -0.8773 -3.5733 8 7 2.9066 -1.9475 -3.4525 9 14 1.6980 -0.2396 -5.2699 10 1 0.8438 0.9675 -5.1337 11 1 2.9352 0.1103 -6.0129 12 1 0.9552 -1.2898 -6.0119 13 6 2.0400 -0.7212 1.2493 14 6 2.9858 0.0485 2.1734 15 6 1.5432 -0.2199 2.6068 16 1 -0.3633 0.5138 0.8900 17 1 -0.3633 0.5138 -0.8899 18 1 -0.3633 -1.0277 0.0005 19 1 3.1299 1.4425 -0.0005 20 1 1.6767 1.9564 -0.8900 21 1 1.6766 1.9563 0.8900 22 1 2.5760 -1.4792 -1.1071 23 1 3.2299 -2.4047 -4.2445 24 1 2.2062 -1.7928 1.1386 25 1 3.7741 -0.5166 2.6706 26 1 3.2451 1.0689 1.8912 27 1 0.8532 0.6240 2.6098 28 1 1.3825 -0.9617 3.3891 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226671251.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:30 Heat of formation + Delta-G solvation = 10.884070 kcal Electronic energy + Delta-G solvation = -10020.574777 eV Core-core repulsion = 8264.772588 eV Total energy + Delta-G solvation = -1755.802189 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.76510 -36.03822 -33.55349 -30.36044 -28.08836 -26.37520 -23.59288 -22.95125 -19.49816 -19.08440 -17.38038 -16.22108 -15.68130 -15.05387 -14.66517 -14.21359 -13.58362 -13.26570 -13.08911 -12.81814 -12.47663 -12.23961 -12.13228 -11.92018 -11.76327 -11.30296 -11.05907 -11.03074 -10.63192 -8.95173 -7.89735 -5.16538 1.46876 1.47456 1.57140 2.57828 3.03748 3.44522 3.80454 3.96127 4.19187 4.27098 4.47195 4.57888 4.75088 4.84702 4.90785 5.04466 5.11307 5.15305 5.21284 5.36518 5.38564 5.51508 5.63711 5.72810 6.33914 7.38617 8.17784 8.40410 9.34803 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.079245 B = 0.013071 C = 0.012466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.248630 B = 2141.674780 C = 2245.633185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.211 3.789 3 C -0.144 4.144 4 N -0.732 5.732 5 C -0.218 4.218 6 H 0.075 0.925 7 C -0.084 4.084 8 N -0.974 5.974 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.296 1.296 12 H -0.296 1.296 13 C -0.169 4.169 14 C -0.180 4.180 15 C -0.154 4.154 16 H 0.072 0.928 17 H 0.035 0.965 18 H 0.036 0.964 19 H 0.043 0.957 20 H 0.035 0.965 21 H 0.071 0.929 22 H 0.369 0.631 23 H 0.248 0.752 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 5.248 10.324 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.122 3.878 3 C -0.203 4.203 4 N -0.372 5.372 5 C -0.350 4.350 6 H 0.093 0.907 7 C -0.276 4.276 8 N -0.626 5.626 9 Si 0.797 3.203 10 H -0.191 1.191 11 H -0.223 1.223 12 H -0.223 1.223 13 C -0.187 4.187 14 C -0.217 4.217 15 C -0.191 4.191 16 H 0.091 0.909 17 H 0.054 0.946 18 H 0.056 0.944 19 H 0.062 0.938 20 H 0.054 0.946 21 H 0.090 0.910 22 H 0.201 0.799 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.114 5.378 10.204 11.947 hybrid contribution 0.210 -0.379 -1.313 1.382 sum -2.903 4.999 8.892 10.606 Atomic orbital electron populations 1.22125 0.96755 1.00500 1.00614 1.19392 0.92456 0.91189 0.84744 1.22247 1.00295 0.97185 1.00547 1.42747 1.60591 1.32803 1.01075 1.19537 1.23326 1.07588 0.84563 0.90718 1.25510 1.01859 0.98883 1.01318 1.69835 1.41649 1.22649 1.28477 0.85146 0.77020 0.77528 0.80601 1.19087 1.22298 1.22320 1.22337 1.06378 0.98516 0.91493 1.23170 0.93730 1.01894 1.02906 1.23006 0.96828 1.03501 0.95761 0.90910 0.94566 0.94445 0.93829 0.94601 0.91000 0.79886 0.94341 0.89780 0.88516 0.88101 0.87764 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 8.23 71.98 0.59 -4.60 15 2 C 0.21 8.40 1.00 3.60 0.00 8.41 15 3 C -0.14 -5.23 7.01 71.98 0.50 -4.73 15 4 N -0.73 -37.75 5.14 -303.35 -1.56 -39.31 15 5 C -0.22 -12.23 8.67 84.03 0.73 -11.50 15 6 H 0.07 4.06 6.69 -2.91 -0.02 4.04 15 7 C -0.08 -4.95 5.50 84.86 0.47 -4.48 15 8 N -0.97 -61.12 13.06 21.65 0.28 -60.84 15 9 Si 0.97 47.23 29.55 68.60 2.03 49.26 15 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 11 H -0.30 -14.45 7.11 99.48 0.71 -13.74 15 12 H -0.30 -14.47 7.11 99.48 0.71 -13.76 15 13 C -0.17 -5.68 5.34 -10.79 -0.06 -5.74 15 14 C -0.18 -4.94 9.50 30.59 0.29 -4.65 15 15 C -0.15 -3.80 9.40 30.60 0.29 -3.51 15 16 H 0.07 2.13 7.00 -2.39 -0.02 2.11 15 17 H 0.04 1.43 7.27 -2.39 -0.02 1.41 15 18 H 0.04 1.43 8.14 -2.39 -0.02 1.41 15 19 H 0.04 1.64 7.23 -2.39 -0.02 1.62 15 20 H 0.03 1.40 7.27 -2.39 -0.02 1.39 15 21 H 0.07 2.08 7.18 -2.39 -0.02 2.06 15 22 H 0.37 20.73 7.60 -92.71 -0.70 20.02 15 23 H 0.25 15.09 8.31 -92.71 -0.77 14.32 15 24 H 0.08 3.09 8.04 -2.39 -0.02 3.07 15 25 H 0.10 2.41 8.14 -2.39 -0.02 2.39 15 26 H 0.10 2.73 5.82 -2.39 -0.01 2.71 15 27 H 0.10 2.33 7.08 -2.39 -0.02 2.31 15 28 H 0.11 2.23 8.14 -2.38 -0.02 2.21 15 Total: -1.00 -63.61 227.63 4.00 -59.61 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.43 Total: 22.09 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 2.82 Total: -30.80 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -1.28 Total: -100.15 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -63.61 4.00 -59.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226671251.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.491 kcal (2) G-P(sol) polarization free energy of solvation -63.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds