Wall clock time and date at job start Mon Mar 30 2020 01:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 112.84805 * 2 1 4 4 C 1.46902 * 110.99996 * 48.80490 * 3 2 1 5 5 C 1.50692 * 109.47209 * 180.02562 * 4 3 2 6 6 H 1.08006 * 120.00262 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00186 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00209 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99861 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47099 * 89.99962 * 9 7 5 11 11 H 1.48501 * 109.47164 * 209.99980 * 9 7 5 12 12 H 1.48500 * 109.47199 * 329.99670 * 9 7 5 13 13 C 1.53782 * 113.61779 * 228.80278 * 2 1 3 14 14 C 1.53781 * 87.08260 * 219.93457 * 13 2 1 15 15 C 1.53786 * 87.17350 * 25.39213 * 14 13 2 16 16 H 1.09005 * 109.46921 * 191.19733 * 1 2 3 17 17 H 1.08996 * 109.47532 * 311.19465 * 1 2 3 18 18 H 1.08997 * 109.47245 * 71.19890 * 1 2 3 19 19 H 1.00906 * 110.99901 * 172.75517 * 3 2 1 20 20 H 1.09004 * 109.46623 * 300.00186 * 4 3 2 21 21 H 1.09005 * 109.47168 * 59.99902 * 4 3 2 22 22 H 0.96997 * 119.99641 * 180.02562 * 8 7 5 23 23 H 1.09001 * 113.61250 * 105.38275 * 13 2 1 24 24 H 1.08997 * 113.61225 * 334.48116 * 13 2 1 25 25 H 1.09002 * 113.61445 * 139.98212 * 14 13 2 26 26 H 1.09002 * 113.61408 * 270.79943 * 14 13 2 27 27 H 1.08993 * 113.61491 * 89.15923 * 15 14 13 28 28 H 1.09000 * 113.61138 * 220.06261 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1004 1.3538 0.0000 4 6 1.4724 2.1896 1.0320 5 6 2.0813 3.5677 1.0013 6 1 2.8575 3.7995 0.2870 7 6 1.6475 4.5329 1.8852 8 7 2.1792 5.7355 1.8588 9 14 0.3055 4.1320 3.1212 10 1 0.9211 3.6178 4.3709 11 1 -0.4733 5.3601 3.4221 12 1 -0.5982 3.0995 2.5533 13 6 2.1461 -0.9281 -1.0602 14 6 3.1937 -1.3119 -0.0019 15 6 2.1499 -0.9284 1.0603 16 1 -0.3633 -1.0082 0.1996 17 1 -0.3634 0.6768 0.7732 18 1 -0.3633 0.3312 -0.9728 19 1 3.1020 1.3241 0.1188 20 1 0.4019 2.2613 0.8395 21 1 1.6362 1.7413 2.0120 22 1 1.8743 6.4144 2.4809 23 1 2.5637 -0.3970 -1.9156 24 1 1.4952 -1.7531 -1.3495 25 1 3.4469 -2.3721 -0.0025 26 1 4.0725 -0.6669 -0.0034 27 1 1.5001 -1.7535 1.3518 28 1 2.5707 -0.3976 1.9143 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228850244.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:41 Heat of formation + Delta-G solvation = -7.357743 kcal Electronic energy + Delta-G solvation = -9929.652209 eV Core-core repulsion = 8173.058995 eV Total energy + Delta-G solvation = -1756.593213 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.51703 -35.66976 -33.81421 -30.34375 -28.67774 -26.52113 -24.06253 -22.64447 -19.71983 -18.71993 -16.90758 -16.49181 -16.06756 -14.95887 -14.90252 -14.55153 -14.23965 -13.82930 -13.25772 -12.97743 -12.74866 -12.52127 -12.07433 -11.87857 -11.65348 -11.38312 -11.26155 -10.89095 -10.81055 -9.08405 -8.32504 -6.36685 1.31925 1.34117 1.45699 2.31878 3.01375 3.38836 3.74217 3.80195 4.03382 4.08127 4.64449 4.73228 4.77824 4.85487 4.87937 4.92756 5.01872 5.08779 5.20172 5.28221 5.38850 5.48206 5.56065 6.01081 6.57580 6.66716 6.78326 7.28303 8.84489 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069502 B = 0.013218 C = 0.012328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.767125 B = 2117.855205 C = 2270.643261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.070 3.930 3 N -0.667 5.667 4 C 0.179 3.821 5 C -0.531 4.531 6 H 0.035 0.965 7 C 0.008 3.992 8 N -0.947 5.947 9 Si 0.950 3.050 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.250 1.250 13 C -0.120 4.120 14 C -0.134 4.134 15 C -0.173 4.173 16 H 0.083 0.917 17 H 0.039 0.961 18 H 0.057 0.943 19 H 0.335 0.665 20 H 0.032 0.968 21 H -0.019 1.019 22 H 0.268 0.732 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 -14.982 -1.177 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 N -0.297 5.297 4 C 0.050 3.950 5 C -0.569 4.569 6 H 0.054 0.946 7 C -0.189 4.189 8 N -0.588 5.588 9 Si 0.773 3.227 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.174 1.174 13 C -0.158 4.158 14 C -0.171 4.171 15 C -0.213 4.213 16 H 0.102 0.898 17 H 0.058 0.942 18 H 0.076 0.924 19 H 0.152 0.848 20 H 0.049 0.951 21 H -0.002 1.002 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.123 0.877 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.526 -14.569 -1.615 15.077 hybrid contribution 0.205 0.289 1.363 1.408 sum -3.321 -14.281 -0.252 14.664 Atomic orbital electron populations 1.21788 0.93569 1.02180 1.01724 1.22387 0.95025 0.87683 0.97094 1.60321 1.08726 1.09931 1.50718 1.19721 0.95567 0.90999 0.88695 1.21391 1.21369 0.96308 1.17850 0.94649 1.25882 0.99157 0.94490 0.99408 1.70055 1.44834 1.04704 1.39198 0.85669 0.79444 0.78466 0.79100 1.19148 1.20364 1.17354 1.23035 0.97974 0.98321 0.96471 1.22750 0.96483 1.02005 0.95900 1.23780 0.99752 1.00529 0.97194 0.89808 0.94160 0.92380 0.84758 0.95058 1.00156 0.92296 0.91816 0.87690 0.89393 0.91290 0.88243 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 8.91 71.98 0.64 -3.50 15 2 C 0.07 2.29 1.23 4.11 0.01 2.29 15 3 N -0.67 -28.38 6.43 -471.23 -3.03 -31.41 15 4 C 0.18 8.82 3.85 85.55 0.33 9.15 15 5 C -0.53 -31.78 9.87 25.60 0.25 -31.53 15 6 H 0.04 2.35 8.06 -2.91 -0.02 2.32 15 7 C 0.01 0.48 5.47 84.65 0.46 0.95 15 8 N -0.95 -60.35 13.96 21.45 0.30 -60.05 15 9 Si 0.95 44.98 27.47 68.60 1.88 46.86 15 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 12 H -0.25 -11.07 6.54 99.48 0.65 -10.42 15 13 C -0.12 -3.11 7.44 31.12 0.23 -2.88 15 14 C -0.13 -3.30 7.73 31.12 0.24 -3.06 15 15 C -0.17 -4.91 7.26 31.18 0.23 -4.68 15 16 H 0.08 1.98 7.96 -2.38 -0.02 1.96 15 17 H 0.04 1.39 6.02 -2.39 -0.01 1.38 15 18 H 0.06 1.76 8.14 -2.39 -0.02 1.74 15 19 H 0.33 14.15 7.88 -89.69 -0.71 13.44 15 20 H 0.03 1.56 5.29 -2.39 -0.01 1.55 15 21 H -0.02 -0.94 7.28 -2.38 -0.02 -0.95 15 22 H 0.27 15.82 8.31 -92.71 -0.77 15.05 15 23 H 0.06 1.76 8.14 -2.39 -0.02 1.74 15 24 H 0.10 2.17 8.10 -2.39 -0.02 2.15 15 25 H 0.09 1.72 8.14 -2.39 -0.02 1.70 15 26 H 0.07 1.83 7.72 -2.39 -0.02 1.81 15 27 H 0.10 2.34 7.98 -2.39 -0.02 2.32 15 28 H 0.04 1.43 7.90 -2.39 -0.02 1.41 15 Total: -1.00 -66.00 227.29 1.91 -64.09 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.37 Total: 13.76 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 2.39 Total: -33.25 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -2.73 Total: -91.46 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -66.00 1.91 -64.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228850244.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.732 kcal (2) G-P(sol) polarization free energy of solvation -66.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds