Wall clock time and date at job start Mon Mar 30 2020 01:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.53778 * 113.61727 * 274.13766 * 12 11 10 14 14 C 1.53956 * 87.02468 * 220.04570 * 13 12 11 15 15 C 1.53784 * 113.61658 * 176.52792 * 12 11 10 16 16 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 17 17 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 18 18 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 19 19 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 20 20 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 21 21 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 22 22 H 1.09000 * 112.84915 * 45.33452 * 12 11 10 23 23 H 1.08996 * 113.61184 * 334.56845 * 13 12 11 24 24 H 1.09000 * 113.61578 * 105.46835 * 13 12 11 25 25 H 1.09002 * 113.53647 * 270.81670 * 14 13 12 26 26 H 1.08996 * 113.66740 * 139.92974 * 14 13 12 27 27 H 1.08998 * 113.61407 * 254.52625 * 15 12 11 28 28 H 1.08996 * 113.61156 * 25.35491 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 6 1.8290 -6.1446 -0.0029 13 6 2.2251 -6.6266 -1.4084 14 6 1.8598 -8.0460 -0.9372 15 6 0.9190 -7.3814 0.0818 16 1 -0.4851 0.8400 0.0004 17 1 0.3556 -2.3881 -0.0016 18 1 2.6855 -3.7140 -0.8911 19 1 2.6842 -3.7148 0.8888 20 1 0.4370 -4.7622 0.8875 21 1 0.4377 -4.7618 -0.8924 22 1 2.6521 -6.1585 0.7115 23 1 1.5766 -6.2484 -2.1986 24 1 3.2844 -6.4987 -1.6315 25 1 2.6922 -8.5803 -0.4791 26 1 1.3397 -8.6370 -1.6910 27 1 0.9254 -7.8621 1.0600 28 1 -0.0877 -7.2096 -0.2990 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229100082.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:47 Heat of formation + Delta-G solvation = 12.495757 kcal Electronic energy + Delta-G solvation = -9479.242033 eV Core-core repulsion = 7723.509732 eV Total energy + Delta-G solvation = -1755.732301 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.72131 -34.74120 -31.77152 -29.06192 -25.49224 -24.78971 -22.57060 -20.79065 -19.17717 -17.00584 -15.41563 -14.78119 -14.29556 -13.96285 -13.27984 -12.92746 -12.28378 -12.04206 -11.95297 -10.98583 -10.87153 -10.73656 -10.61407 -10.36133 -10.15106 -9.85795 -9.80693 -9.49326 -8.80423 -6.84620 -5.70596 -2.98730 3.47295 3.51863 3.54030 4.63537 4.79962 4.83830 4.92488 5.04384 5.60880 5.65183 5.71956 5.85445 5.91187 5.95898 6.04440 6.08933 6.25009 6.37582 6.47126 6.54349 6.70460 6.98374 7.03594 7.75334 8.48976 9.59451 10.19672 10.54369 11.52697 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.126088 B = 0.008362 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 222.013714 B = 3347.504740 C = 3459.409350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.736 5.736 10 C 0.154 3.846 11 C -0.116 4.116 12 C -0.105 4.105 13 C -0.136 4.136 14 C -0.144 4.144 15 C -0.139 4.139 16 H 0.254 0.746 17 H 0.383 0.617 18 H 0.017 0.983 19 H 0.015 0.985 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -12.944 -0.889 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.380 5.380 10 C 0.026 3.974 11 C -0.154 4.154 12 C -0.124 4.124 13 C -0.174 4.174 14 C -0.182 4.182 15 C -0.176 4.176 16 H 0.064 0.936 17 H 0.216 0.784 18 H 0.035 0.965 19 H 0.033 0.967 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.105 0.895 23 H 0.099 0.901 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.957 -12.821 -0.881 13.187 hybrid contribution 0.153 0.976 0.000 0.988 sum 3.110 -11.845 -0.881 12.278 Atomic orbital electron populations 1.69665 1.05120 1.25550 1.58144 1.24740 0.95532 0.97672 1.03266 0.86179 0.78630 0.83854 0.77490 1.21761 1.21783 1.20785 1.19269 0.91054 0.84317 1.42215 0.91235 1.42410 1.05896 1.00199 1.89445 1.20638 0.93670 0.85567 0.97506 1.21705 0.98471 0.93438 1.01792 1.22476 0.98477 0.94076 0.97332 1.22997 1.01329 0.95693 0.97366 1.22851 0.99563 0.96675 0.99088 1.22948 0.98443 0.97146 0.99076 0.93576 0.78380 0.96486 0.96668 0.92061 0.92061 0.89533 0.90124 0.91800 0.90626 0.91951 0.91965 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.24 13.06 55.49 0.72 -28.52 15 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 15 3 Si 0.91 23.03 29.55 -169.99 -5.02 18.00 15 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 15 5 H -0.29 -7.41 7.11 56.52 0.40 -7.00 15 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 15 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 15 9 N -0.74 -19.83 5.60 -59.91 -0.34 -20.17 15 10 C 0.15 3.32 6.26 -4.04 -0.03 3.29 15 11 C -0.12 -2.02 5.15 -26.74 -0.14 -2.16 15 12 C -0.10 -1.47 3.64 -89.81 -0.33 -1.80 15 13 C -0.14 -1.75 7.65 -25.83 -0.20 -1.95 15 14 C -0.14 -1.59 8.09 -25.82 -0.21 -1.79 15 15 C -0.14 -1.67 7.65 -25.91 -0.20 -1.86 15 16 H 0.25 7.64 8.31 -40.82 -0.34 7.30 15 17 H 0.38 10.76 7.67 -40.82 -0.31 10.44 15 18 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 19 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 15 20 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.06 1.08 7.87 -51.93 -0.41 0.67 15 22 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 23 H 0.08 1.07 7.92 -51.93 -0.41 0.66 15 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.08 0.76 8.14 -51.93 -0.42 0.33 15 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 15 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 28 H 0.08 0.95 8.10 -51.93 -0.42 0.53 15 LS Contribution 236.28 15.07 3.56 3.56 Total: -1.00 -31.02 236.28 -6.90 -37.92 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.48 Total: 3.20 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.34 Total: -13.99 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.39 Total: -48.69 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.02 -6.90 -37.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229100082.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.412 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds