Wall clock time and date at job start Mon Mar 30 2020 01:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.53778 * 113.61727 * 274.13766 * 12 11 10 14 14 C 1.53956 * 87.02468 * 220.04570 * 13 12 11 15 15 C 1.53784 * 113.61658 * 176.52792 * 12 11 10 16 16 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 17 17 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 18 18 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 19 19 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 20 20 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 21 21 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 22 22 H 1.09000 * 112.84915 * 45.33452 * 12 11 10 23 23 H 1.08996 * 113.61184 * 334.56845 * 13 12 11 24 24 H 1.09000 * 113.61578 * 105.46835 * 13 12 11 25 25 H 1.09002 * 113.53647 * 270.81670 * 14 13 12 26 26 H 1.08996 * 113.66740 * 139.92974 * 14 13 12 27 27 H 1.08998 * 113.61407 * 254.52625 * 15 12 11 28 28 H 1.08996 * 113.61156 * 25.35491 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 6 1.8290 -6.1446 -0.0029 13 6 2.2251 -6.6266 -1.4084 14 6 1.8598 -8.0460 -0.9372 15 6 0.9190 -7.3814 0.0818 16 1 -0.4851 0.8400 0.0004 17 1 0.3556 -2.3881 -0.0016 18 1 2.6855 -3.7140 -0.8911 19 1 2.6842 -3.7148 0.8888 20 1 0.4370 -4.7622 0.8875 21 1 0.4377 -4.7618 -0.8924 22 1 2.6521 -6.1585 0.7115 23 1 1.5766 -6.2484 -2.1986 24 1 3.2844 -6.4987 -1.6315 25 1 2.6922 -8.5803 -0.4791 26 1 1.3397 -8.6370 -1.6910 27 1 0.9254 -7.8621 1.0600 28 1 -0.0877 -7.2096 -0.2990 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229100082.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:47 Heat of formation + Delta-G solvation = -6.792807 kcal Electronic energy + Delta-G solvation = -9480.078448 eV Core-core repulsion = 7723.509732 eV Total energy + Delta-G solvation = -1756.568716 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.79911 -36.68921 -33.74978 -30.85529 -26.69697 -26.34587 -24.27983 -22.36012 -20.22029 -19.16290 -16.72699 -16.47070 -15.70034 -15.52583 -15.25915 -14.70545 -13.35631 -13.34671 -13.26168 -12.97215 -12.78360 -12.25478 -12.10871 -11.96745 -11.86386 -11.35990 -11.03430 -10.89039 -10.86603 -9.03027 -7.97266 -5.27237 1.45938 1.48713 1.57350 2.54938 3.35988 3.70195 3.81772 3.85242 4.03790 4.18969 4.41149 4.62875 4.75726 4.78966 4.93820 4.96006 4.97407 5.13437 5.13981 5.31528 5.35278 5.46917 5.51246 5.70507 6.25387 7.30665 8.06930 8.30906 9.26692 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.126088 B = 0.008362 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 222.013714 B = 3347.504740 C = 3459.409350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.252 4.252 8 H 0.075 0.925 9 N -0.751 5.751 10 C 0.152 3.848 11 C -0.104 4.104 12 C -0.110 4.110 13 C -0.142 4.142 14 C -0.131 4.131 15 C -0.135 4.135 16 H 0.253 0.747 17 H 0.373 0.627 18 H 0.018 0.982 19 H 0.016 0.984 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.749 -13.762 -0.902 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.384 4.384 8 H 0.093 0.907 9 N -0.393 5.393 10 C 0.026 3.974 11 C -0.142 4.142 12 C -0.128 4.128 13 C -0.179 4.179 14 C -0.169 4.169 15 C -0.172 4.172 16 H 0.061 0.939 17 H 0.204 0.796 18 H 0.036 0.964 19 H 0.034 0.966 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.109 0.891 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.919 -13.675 -0.895 14.253 hybrid contribution -0.124 1.190 0.003 1.197 sum 3.796 -12.484 -0.892 13.079 Atomic orbital electron populations 1.69827 1.06740 1.26249 1.59416 1.25641 0.96483 1.01323 1.03435 0.85071 0.77673 0.79025 0.77572 1.21174 1.21880 1.19344 1.19690 0.91559 0.85531 1.41579 0.90726 1.42663 1.05674 1.01506 1.89479 1.20813 0.94369 0.84999 0.97239 1.21594 0.97659 0.93762 1.01198 1.22515 0.98945 0.92835 0.98550 1.23025 1.01373 0.97196 0.96301 1.22813 0.99636 0.95630 0.98787 1.22939 0.98199 0.95887 1.00216 0.93860 0.79563 0.96438 0.96569 0.92650 0.92652 0.89128 0.90883 0.91533 0.89196 0.90669 0.90748 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.35 13.06 21.65 0.28 -61.07 15 2 C -0.08 -4.57 5.50 84.86 0.47 -4.10 15 3 Si 0.98 47.24 29.55 68.60 2.03 49.26 15 4 H -0.28 -13.43 7.11 99.48 0.71 -12.72 15 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 15 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 7 C -0.25 -14.82 9.99 84.03 0.84 -13.98 15 8 H 0.07 4.21 7.83 -2.91 -0.02 4.19 15 9 N -0.75 -40.87 5.60 -343.45 -1.92 -42.80 15 10 C 0.15 6.54 6.26 86.38 0.54 7.08 15 11 C -0.10 -3.59 5.15 30.59 0.16 -3.43 15 12 C -0.11 -2.91 3.64 -10.27 -0.04 -2.94 15 13 C -0.14 -3.38 7.65 31.18 0.24 -3.15 15 14 C -0.13 -2.50 8.09 31.18 0.25 -2.25 15 15 C -0.13 -2.92 7.65 31.12 0.24 -2.69 15 16 H 0.25 15.32 8.31 -92.71 -0.77 14.55 15 17 H 0.37 21.39 7.67 -92.71 -0.71 20.68 15 18 H 0.02 0.76 8.14 -2.39 -0.02 0.74 15 19 H 0.02 0.70 8.14 -2.39 -0.02 0.68 15 20 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 21 H 0.05 1.95 7.87 -2.39 -0.02 1.93 15 22 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 23 H 0.07 1.85 7.92 -2.39 -0.02 1.83 15 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 15 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 15 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 15 28 H 0.08 1.72 8.10 -2.39 -0.02 1.70 15 Total: -1.00 -64.95 236.28 3.49 -61.47 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.40 Total: 18.59 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 2.70 Total: -25.46 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -1.64 Total: -103.87 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal Total: -64.95 3.49 -61.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229100082.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.675 kcal (2) G-P(sol) polarization free energy of solvation -64.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds