Wall clock time and date at job start Mon Mar 30 2020 01:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 115.55348 * 2 1 4 4 C 1.53002 * 117.49807 * 214.33034 * 2 1 3 5 5 C 1.53003 * 117.49978 * 145.67222 * 2 1 3 6 6 H 1.09003 * 117.50157 * 215.00085 * 5 2 1 7 7 C 1.53004 * 117.49628 * 0.02562 * 5 2 1 8 8 N 1.46503 * 109.46973 * 184.99806 * 7 5 2 9 9 C 1.36938 * 120.00031 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99737 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99954 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99760 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99787 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47189 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47251 * 119.99707 * 13 11 9 16 16 H 1.48503 * 109.46666 * 239.99854 * 13 11 9 17 17 H 1.09002 * 109.47153 * 34.41373 * 1 2 3 18 18 H 1.09001 * 109.46832 * 274.41564 * 1 2 3 19 19 H 1.09004 * 109.47261 * 154.41545 * 1 2 3 20 20 H 1.09007 * 109.46996 * 85.58197 * 3 2 1 21 21 H 1.08995 * 109.47579 * 205.58373 * 3 2 1 22 22 H 1.08997 * 109.47014 * 325.58756 * 3 2 1 23 23 H 1.09003 * 117.49882 * 0.02562 * 4 2 1 24 24 H 1.09002 * 117.49659 * 145.01809 * 4 2 1 25 25 H 1.08998 * 109.46885 * 304.99827 * 7 5 2 26 26 H 1.09001 * 109.46762 * 65.00115 * 7 5 2 27 27 H 0.97001 * 120.00248 * 0.02562 * 8 7 5 28 28 H 0.97008 * 119.99398 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2365 -1.1208 0.7653 6 1 3.1714 -0.8747 1.2689 7 6 1.3588 -2.1561 1.4716 8 7 2.2057 -3.0704 2.2417 9 6 1.6376 -4.0868 2.9623 10 1 0.5652 -4.2147 2.9625 11 6 2.4401 -4.9528 3.6924 12 7 3.7471 -4.7971 3.6917 13 14 1.6651 -6.3398 4.6748 14 1 0.1898 -6.2986 4.5103 15 1 2.1821 -7.6426 4.1844 16 1 2.0073 -6.1803 6.1110 17 1 -0.3633 0.8478 -0.5808 18 1 -0.3633 0.0791 1.0246 19 1 -0.3634 -0.9269 -0.4438 20 1 2.2752 1.7423 1.0247 21 1 3.1829 1.3084 -0.4437 22 1 1.5818 2.0738 -0.5808 23 1 1.6111 -1.8578 -1.2693 24 1 3.1715 -0.8747 -1.2686 25 1 0.6673 -1.6482 2.1438 26 1 0.7950 -2.7213 0.7294 27 1 3.1689 -2.9553 2.2419 28 1 4.3078 -5.4025 4.2017 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232910296.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:07 Heat of formation + Delta-G solvation = 19.999501 kcal Electronic energy + Delta-G solvation = -9583.762982 eV Core-core repulsion = 7828.356068 eV Total energy + Delta-G solvation = -1755.406914 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.34480 -34.16604 -31.04340 -28.85220 -27.44317 -25.57509 -22.58389 -20.50087 -18.48170 -16.83017 -15.12916 -14.26953 -14.10394 -13.63084 -13.06534 -12.82400 -12.67716 -12.18425 -11.85921 -11.69438 -11.04359 -10.90082 -10.81615 -10.44784 -10.03056 -9.73114 -9.53002 -9.11779 -8.76305 -6.85046 -5.71831 -2.99860 3.46387 3.51529 3.54203 4.07765 4.63368 5.00571 5.07143 5.26478 5.32325 5.63699 5.79976 5.83974 5.98463 6.04748 6.07536 6.15027 6.23583 6.29615 6.44824 6.47699 6.58578 6.85345 6.97339 7.74647 8.47636 9.58381 10.18296 10.53153 11.51499 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.094845 B = 0.009654 C = 0.009197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.148279 B = 2899.610521 C = 3043.619816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.136 4.136 3 C -0.111 4.111 4 C -0.172 4.172 5 C -0.138 4.138 6 H 0.102 0.898 7 C 0.184 3.816 8 N -0.732 5.732 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 H 0.052 0.948 18 H 0.059 0.941 19 H 0.057 0.943 20 H 0.057 0.943 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.022 0.978 26 H 0.019 0.981 27 H 0.384 0.616 28 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 9.166 -7.087 12.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.136 4.136 3 C -0.169 4.169 4 C -0.209 4.209 5 C -0.157 4.157 6 H 0.120 0.880 7 C 0.056 3.944 8 N -0.376 5.376 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 H 0.071 0.929 18 H 0.078 0.922 19 H 0.076 0.924 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.040 0.960 26 H 0.037 0.963 27 H 0.217 0.783 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.243 9.055 -7.016 12.215 hybrid contribution 0.054 -0.811 0.552 0.982 sum -4.189 8.244 -6.464 11.282 Atomic orbital electron populations 1.21292 0.92415 1.01387 1.01786 1.21560 0.94755 0.91144 1.06184 1.21318 0.99638 0.94316 1.01580 1.23265 1.01696 1.00843 0.95132 1.22735 1.01093 0.98596 0.93257 0.87971 1.20205 0.92193 0.89160 0.92797 1.42390 1.05863 1.33036 1.56316 1.19301 0.91969 1.04790 1.20803 0.91157 1.24744 0.95420 0.99827 1.01170 1.69685 1.02625 1.39992 1.46051 0.86104 0.78189 0.82132 0.79728 1.20551 1.21879 1.21873 0.92863 0.92158 0.92424 0.92398 0.92755 0.92634 0.89076 0.89516 0.96045 0.96336 0.78273 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 8.85 37.16 0.33 -1.16 15 2 C -0.14 -1.97 2.70 -154.51 -0.42 -2.39 15 3 C -0.11 -1.37 9.85 37.16 0.37 -1.00 15 4 C -0.17 -2.66 9.47 -26.69 -0.25 -2.91 15 5 C -0.14 -2.49 5.57 -90.58 -0.50 -2.99 15 6 H 0.10 1.91 8.04 -51.93 -0.42 1.50 15 7 C 0.18 3.98 5.62 -4.04 -0.02 3.96 15 8 N -0.73 -19.68 5.60 -59.90 -0.34 -20.01 15 9 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 15 10 H 0.07 1.99 7.83 -52.49 -0.41 1.58 15 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 15 12 N -0.93 -29.14 13.06 55.49 0.72 -28.41 15 13 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 15 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 15 H -0.29 -7.37 7.11 56.52 0.40 -6.97 15 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 15 17 H 0.05 0.60 7.93 -51.93 -0.41 0.18 15 18 H 0.06 0.82 7.84 -51.93 -0.41 0.41 15 19 H 0.06 0.77 7.90 -51.93 -0.41 0.36 15 20 H 0.06 0.71 8.14 -51.92 -0.42 0.29 15 21 H 0.05 0.64 7.90 -51.93 -0.41 0.23 15 22 H 0.05 0.59 7.93 -51.93 -0.41 0.18 15 23 H 0.09 1.40 7.94 -51.93 -0.41 0.99 15 24 H 0.09 1.22 8.05 -51.93 -0.42 0.80 15 25 H 0.02 0.47 7.77 -51.93 -0.40 0.07 15 26 H 0.02 0.41 7.88 -51.93 -0.41 0.00 15 27 H 0.38 10.79 7.60 -40.82 -0.31 10.48 15 28 H 0.25 7.60 8.31 -40.82 -0.34 7.26 15 LS Contribution 238.13 15.07 3.59 3.59 Total: -1.00 -30.94 238.13 -6.18 -37.13 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.39 Total: 3.95 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -0.75 Total: -14.15 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.39 Total: -48.43 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.94 -6.18 -37.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232910296.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.127 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds