Wall clock time and date at job start Mon Mar 30 2020 01:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 115.55348 * 2 1 4 4 C 1.53002 * 117.49807 * 214.33034 * 2 1 3 5 5 C 1.53003 * 117.49978 * 145.67222 * 2 1 3 6 6 H 1.09003 * 117.50157 * 215.00085 * 5 2 1 7 7 C 1.53004 * 117.49628 * 0.02562 * 5 2 1 8 8 N 1.46503 * 109.46973 * 184.99806 * 7 5 2 9 9 C 1.36938 * 120.00031 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99737 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99954 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99760 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99787 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47189 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47251 * 119.99707 * 13 11 9 16 16 H 1.48503 * 109.46666 * 239.99854 * 13 11 9 17 17 H 1.09002 * 109.47153 * 34.41373 * 1 2 3 18 18 H 1.09001 * 109.46832 * 274.41564 * 1 2 3 19 19 H 1.09004 * 109.47261 * 154.41545 * 1 2 3 20 20 H 1.09007 * 109.46996 * 85.58197 * 3 2 1 21 21 H 1.08995 * 109.47579 * 205.58373 * 3 2 1 22 22 H 1.08997 * 109.47014 * 325.58756 * 3 2 1 23 23 H 1.09003 * 117.49882 * 0.02562 * 4 2 1 24 24 H 1.09002 * 117.49659 * 145.01809 * 4 2 1 25 25 H 1.08998 * 109.46885 * 304.99827 * 7 5 2 26 26 H 1.09001 * 109.46762 * 65.00115 * 7 5 2 27 27 H 0.97001 * 120.00248 * 0.02562 * 8 7 5 28 28 H 0.97008 * 119.99398 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2365 -1.1208 0.7653 6 1 3.1714 -0.8747 1.2689 7 6 1.3588 -2.1561 1.4716 8 7 2.2057 -3.0704 2.2417 9 6 1.6376 -4.0868 2.9623 10 1 0.5652 -4.2147 2.9625 11 6 2.4401 -4.9528 3.6924 12 7 3.7471 -4.7971 3.6917 13 14 1.6651 -6.3398 4.6748 14 1 0.1898 -6.2986 4.5103 15 1 2.1821 -7.6426 4.1844 16 1 2.0073 -6.1803 6.1110 17 1 -0.3633 0.8478 -0.5808 18 1 -0.3633 0.0791 1.0246 19 1 -0.3634 -0.9269 -0.4438 20 1 2.2752 1.7423 1.0247 21 1 3.1829 1.3084 -0.4437 22 1 1.5818 2.0738 -0.5808 23 1 1.6111 -1.8578 -1.2693 24 1 3.1715 -0.8747 -1.2686 25 1 0.6673 -1.6482 2.1438 26 1 0.7950 -2.7213 0.7294 27 1 3.1689 -2.9553 2.2419 28 1 4.3078 -5.4025 4.2017 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232910296.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:07 Heat of formation + Delta-G solvation = 0.484531 kcal Electronic energy + Delta-G solvation = -9584.609215 eV Core-core repulsion = 7828.356068 eV Total energy + Delta-G solvation = -1756.253147 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.65244 -36.19226 -33.08871 -30.19508 -28.54194 -27.36624 -24.58154 -21.95440 -19.92496 -18.80075 -16.87645 -16.02005 -15.59974 -15.07399 -14.73220 -14.41983 -14.27874 -13.35030 -13.07140 -12.97886 -12.81126 -12.75711 -12.23071 -12.09812 -11.87656 -11.77451 -11.17660 -10.62380 -10.38844 -9.02010 -7.97736 -5.27561 1.46072 1.47852 1.58226 2.53653 2.82248 3.35932 3.69862 3.86931 3.98855 4.21514 4.31678 4.58700 4.70727 4.81785 4.93254 4.98643 5.05356 5.08663 5.12367 5.17174 5.30786 5.34930 5.47266 5.54320 6.24972 7.30250 8.06258 8.30584 9.26547 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.094845 B = 0.009654 C = 0.009197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.148279 B = 2899.610521 C = 3043.619816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.113 4.113 3 C -0.112 4.112 4 C -0.166 4.166 5 C -0.169 4.169 6 H 0.089 0.911 7 C 0.188 3.812 8 N -0.746 5.746 9 C -0.250 4.250 10 H 0.076 0.924 11 C -0.077 4.077 12 N -0.972 5.972 13 Si 0.979 3.021 14 H -0.265 1.265 15 H -0.291 1.291 16 H -0.290 1.290 17 H 0.081 0.919 18 H 0.054 0.946 19 H 0.052 0.948 20 H 0.056 0.944 21 H 0.059 0.941 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.102 0.898 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.373 0.627 28 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.145 9.845 -7.748 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.114 4.114 3 C -0.169 4.169 4 C -0.203 4.203 5 C -0.188 4.188 6 H 0.107 0.893 7 C 0.061 3.939 8 N -0.389 5.389 9 C -0.382 4.382 10 H 0.093 0.907 11 C -0.269 4.269 12 N -0.622 5.622 13 Si 0.807 3.193 14 H -0.189 1.189 15 H -0.218 1.218 16 H -0.217 1.217 17 H 0.099 0.901 18 H 0.073 0.927 19 H 0.071 0.929 20 H 0.075 0.925 21 H 0.078 0.922 22 H 0.098 0.902 23 H 0.109 0.891 24 H 0.120 0.880 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.205 0.795 28 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.317 9.757 -7.698 13.517 hybrid contribution 0.355 -0.970 0.715 1.256 sum -4.961 8.787 -6.982 12.271 Atomic orbital electron populations 1.21357 0.91404 1.02452 1.01948 1.21752 0.95533 0.91462 1.02611 1.21369 1.00254 0.93120 1.02115 1.23346 1.02621 1.01304 0.92982 1.22522 1.00982 1.00524 0.94754 0.89283 1.20253 0.92176 0.89130 0.92292 1.42630 1.05869 1.33588 1.56820 1.19718 0.92382 1.05325 1.20781 0.90651 1.25645 0.95948 1.02621 1.02648 1.69846 1.04066 1.41149 1.47178 0.84998 0.78044 0.78509 0.77743 1.18931 1.21764 1.21746 0.90051 0.92729 0.92892 0.92496 0.92192 0.90206 0.89127 0.88011 0.96323 0.96419 0.79541 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.77 8.85 71.98 0.64 -2.14 15 2 C -0.11 -3.05 2.70 -52.18 -0.14 -3.19 15 3 C -0.11 -2.42 9.85 71.98 0.71 -1.71 15 4 C -0.17 -4.85 9.47 30.62 0.29 -4.56 15 5 C -0.17 -6.03 5.57 -10.77 -0.06 -6.09 15 6 H 0.09 3.39 8.04 -2.39 -0.02 3.37 15 7 C 0.19 8.18 5.62 86.38 0.49 8.66 15 8 N -0.75 -40.84 5.60 -343.44 -1.92 -42.76 15 9 C -0.25 -14.72 9.99 84.03 0.84 -13.88 15 10 H 0.08 4.25 7.83 -2.91 -0.02 4.22 15 11 C -0.08 -4.56 5.50 84.86 0.47 -4.09 15 12 N -0.97 -61.48 13.06 21.65 0.28 -61.20 15 13 Si 0.98 47.24 29.55 68.60 2.03 49.27 15 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 15 H -0.29 -13.90 7.11 99.48 0.71 -13.19 15 16 H -0.29 -13.89 7.11 99.48 0.71 -13.18 15 17 H 0.08 1.53 7.93 -2.39 -0.02 1.51 15 18 H 0.05 1.39 7.84 -2.39 -0.02 1.37 15 19 H 0.05 1.32 7.90 -2.38 -0.02 1.30 15 20 H 0.06 1.26 8.14 -2.38 -0.02 1.24 15 21 H 0.06 1.24 7.90 -2.39 -0.02 1.22 15 22 H 0.08 1.37 7.93 -2.39 -0.02 1.35 15 23 H 0.09 2.66 7.94 -2.39 -0.02 2.64 15 24 H 0.10 2.66 8.05 -2.39 -0.02 2.64 15 25 H 0.02 0.83 7.77 -2.39 -0.02 0.81 15 26 H 0.02 0.78 7.88 -2.39 -0.02 0.76 15 27 H 0.37 21.59 7.60 -92.71 -0.70 20.89 15 28 H 0.25 15.31 8.31 -92.70 -0.77 14.54 15 Total: -1.00 -65.50 238.13 4.03 -61.47 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.41 Total: 20.22 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 3.23 Total: -27.00 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -1.64 Total: -103.96 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -65.50 4.03 -61.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232910296.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.954 kcal (2) G-P(sol) polarization free energy of solvation -65.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds