Wall clock time and date at job start Mon Mar 30 2020 01:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47008 * 2 1 4 4 C 1.52997 * 115.56075 * 279.79951 * 3 2 1 5 5 N 1.46500 * 109.47013 * 319.78557 * 4 3 2 6 6 C 1.36939 * 119.99531 * 173.89221 * 5 4 3 7 7 H 1.07999 * 120.00528 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99478 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99860 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00395 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47105 * 89.99815 * 10 8 6 12 12 H 1.48501 * 109.47312 * 209.99994 * 10 8 6 13 13 H 1.48498 * 109.47093 * 330.00119 * 10 8 6 14 14 C 1.52999 * 117.49834 * 134.10758 * 3 2 1 15 15 C 1.53001 * 60.00162 * 252.51302 * 14 3 2 16 16 H 1.08999 * 109.47731 * 299.82562 * 1 2 3 17 17 H 1.09000 * 109.47292 * 59.83222 * 1 2 3 18 18 H 1.09010 * 109.47080 * 179.83183 * 1 2 3 19 19 H 1.09003 * 109.47454 * 239.99899 * 2 1 3 20 20 H 1.09005 * 109.47338 * 119.99569 * 2 1 3 21 21 H 1.08999 * 109.47071 * 79.78917 * 4 3 2 22 22 H 1.08999 * 109.46586 * 199.78675 * 4 3 2 23 23 H 0.96998 * 120.00181 * 353.89303 * 5 4 3 24 24 H 0.97002 * 119.99741 * 180.02562 * 9 8 6 25 25 H 1.09000 * 117.49898 * 0.02562 * 14 3 2 26 26 H 1.09004 * 117.49811 * 145.02312 * 14 3 2 27 27 H 1.08995 * 117.50004 * 252.51347 * 15 14 3 28 28 H 1.08996 * 117.49696 * 107.49134 * 15 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0385 2.1432 -1.3601 5 7 2.4764 1.2027 -2.3944 6 6 2.4355 1.5680 -3.7135 7 1 2.0809 2.5495 -3.9914 8 6 2.8509 0.6770 -4.6935 9 7 2.8122 1.0282 -5.9615 10 14 3.4649 -1.0205 -4.2130 11 1 2.3235 -1.9700 -4.1842 12 1 4.4686 -1.4831 -5.2050 13 1 4.0908 -0.9580 -2.8678 14 6 3.1660 1.7938 0.9745 15 6 1.7445 2.2963 1.2349 16 1 -0.3634 0.5111 0.8915 17 1 -0.3634 0.5164 -0.8885 18 1 -0.3634 -1.0278 -0.0030 19 1 1.8934 -0.5138 -0.8900 20 1 1.8933 -0.5138 0.8900 21 1 1.0311 2.4913 -1.5884 22 1 2.7191 2.9941 -1.3311 23 1 2.7952 0.3212 -2.1449 24 1 3.1021 0.4054 -6.6463 25 1 3.5438 0.9970 1.6153 26 1 3.9058 2.5241 0.6466 27 1 1.5491 3.3571 1.0783 28 1 1.1869 1.8302 2.0472 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232939229.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:25 Heat of formation + Delta-G solvation = 7.509602 kcal Electronic energy + Delta-G solvation = -9875.029610 eV Core-core repulsion = 8119.081093 eV Total energy + Delta-G solvation = -1755.948517 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.62738 -36.05413 -33.27802 -32.56285 -28.19790 -24.80624 -24.20949 -23.02948 -20.26705 -19.22668 -16.78844 -16.58441 -15.79882 -15.22307 -14.77708 -14.47549 -14.19466 -13.75204 -13.25759 -12.94810 -12.85809 -12.31203 -12.22503 -11.92851 -11.83809 -11.50060 -11.13319 -10.96357 -10.48584 -9.29649 -8.05205 -5.37956 1.34466 1.38138 1.45654 2.45933 2.88622 3.26282 3.64604 3.83365 4.01267 4.09117 4.17854 4.56751 4.66514 4.76311 4.83318 4.91183 5.05828 5.07747 5.13955 5.31703 5.34822 5.39703 5.48592 5.72991 6.19678 7.05860 7.82784 8.03534 9.16645 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.056865 B = 0.014238 C = 0.013364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.277180 B = 1966.059260 C = 2094.624615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.152 4.152 4 C 0.191 3.809 5 N -0.753 5.753 6 C -0.237 4.237 7 H 0.054 0.946 8 C -0.064 4.064 9 N -0.984 5.984 10 Si 0.953 3.047 11 H -0.275 1.275 12 H -0.292 1.292 13 H -0.254 1.254 14 C -0.172 4.172 15 C -0.148 4.148 16 H 0.070 0.930 17 H 0.034 0.966 18 H 0.060 0.940 19 H 0.043 0.957 20 H 0.080 0.920 21 H 0.024 0.976 22 H 0.017 0.983 23 H 0.368 0.632 24 H 0.259 0.741 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 -2.399 16.351 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.152 4.152 4 C 0.065 3.935 5 N -0.400 5.400 6 C -0.368 4.368 7 H 0.072 0.928 8 C -0.255 4.255 9 N -0.634 5.634 10 Si 0.780 3.220 11 H -0.201 1.201 12 H -0.218 1.218 13 H -0.179 1.179 14 C -0.209 4.209 15 C -0.186 4.186 16 H 0.089 0.911 17 H 0.054 0.946 18 H 0.079 0.921 19 H 0.062 0.938 20 H 0.099 0.901 21 H 0.042 0.958 22 H 0.035 0.965 23 H 0.203 0.797 24 H 0.068 0.932 25 H 0.125 0.875 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.924 -2.248 16.188 16.456 hybrid contribution 0.431 -0.698 -0.627 1.033 sum -1.493 -2.946 15.561 15.907 Atomic orbital electron populations 1.21658 0.94822 1.01673 1.01694 1.21027 0.96745 0.93132 1.01449 1.21672 1.05590 0.97030 0.90900 1.20207 0.96252 0.91101 0.85972 1.42771 1.79153 1.15870 1.02217 1.19071 1.35070 0.99366 0.83285 0.92778 1.25506 1.02470 1.02633 0.94896 1.69888 1.55723 1.37593 1.00235 0.85440 0.78314 0.80241 0.78048 1.20053 1.21809 1.17886 1.23182 0.91926 1.03753 1.02067 1.23015 0.98222 0.99663 0.97673 0.91061 0.94637 0.92112 0.93789 0.90105 0.95841 0.96486 0.79726 0.93243 0.87461 0.89517 0.88565 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.80 71.98 0.71 -3.06 15 2 C -0.09 -2.51 5.71 30.59 0.17 -2.34 15 3 C -0.15 -4.66 1.85 -52.18 -0.10 -4.76 15 4 C 0.19 7.79 6.33 86.38 0.55 8.34 15 5 N -0.75 -37.22 5.07 -343.46 -1.74 -38.96 15 6 C -0.24 -14.15 10.47 84.03 0.88 -13.27 15 7 H 0.05 3.53 8.06 -2.91 -0.02 3.51 15 8 C -0.06 -3.88 5.50 84.86 0.47 -3.41 15 9 N -0.98 -64.61 13.97 21.65 0.30 -64.31 15 10 Si 0.95 46.71 27.74 68.60 1.90 48.62 15 11 H -0.27 -13.01 7.11 99.48 0.71 -12.30 15 12 H -0.29 -14.29 7.11 99.48 0.71 -13.58 15 13 H -0.25 -11.39 6.52 99.48 0.65 -10.74 15 14 C -0.17 -4.41 9.82 30.59 0.30 -4.11 15 15 C -0.15 -3.44 9.55 30.60 0.29 -3.15 15 16 H 0.07 1.56 7.68 -2.39 -0.02 1.54 15 17 H 0.03 1.11 8.14 -2.39 -0.02 1.09 15 18 H 0.06 1.44 8.14 -2.38 -0.02 1.42 15 19 H 0.04 1.52 6.01 -2.39 -0.01 1.51 15 20 H 0.08 1.92 7.95 -2.38 -0.02 1.90 15 21 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 22 H 0.02 0.72 7.95 -2.39 -0.02 0.70 15 23 H 0.37 17.33 3.66 -92.71 -0.34 16.99 15 24 H 0.26 16.10 8.31 -92.71 -0.77 15.33 15 25 H 0.11 2.33 8.08 -2.39 -0.02 2.31 15 26 H 0.09 2.32 8.09 -2.38 -0.02 2.30 15 27 H 0.10 2.16 8.14 -2.39 -0.02 2.14 15 28 H 0.11 2.13 7.96 -2.39 -0.02 2.11 15 Total: -1.00 -67.65 232.86 4.46 -63.19 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.72 Total: 17.21 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 3.27 Total: -25.75 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -1.44 Total: -103.27 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.90 Total: 48.62 kcal Total: -67.65 4.46 -63.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232939229.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.703 kcal (2) G-P(sol) polarization free energy of solvation -67.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds