Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99758 * 2 1 4 4 H 1.48499 * 109.47210 * 270.00186 * 3 2 1 5 5 H 1.48502 * 109.47110 * 29.99840 * 3 2 1 6 6 H 1.48502 * 109.46993 * 149.99571 * 3 2 1 7 7 C 1.37878 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99794 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47131 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.46999 * 305.00116 * 10 9 7 12 12 N 1.46898 * 109.47056 * 65.00031 * 10 9 7 13 13 C 1.52998 * 109.47346 * 185.00300 * 10 9 7 14 14 C 1.53782 * 113.61779 * 179.97438 * 13 10 9 15 15 C 1.53781 * 87.08260 * 219.93457 * 14 13 10 16 16 C 1.53786 * 87.17350 * 25.39213 * 15 14 13 17 17 H 0.97002 * 120.00581 * 0.02562 * 1 2 3 18 18 H 1.09007 * 109.46759 * 60.00070 * 9 7 2 19 19 H 1.09004 * 109.47414 * 300.00842 * 9 7 2 20 20 H 1.00896 * 111.00494 * 296.04712 * 12 10 9 21 21 H 1.00896 * 110.99804 * 60.00560 * 12 10 9 22 22 H 1.08997 * 112.84789 * 311.19983 * 13 10 9 23 23 H 1.09001 * 113.61250 * 105.38275 * 14 13 10 24 24 H 1.08997 * 113.61225 * 334.48116 * 14 13 10 25 25 H 1.09002 * 113.61445 * 139.98212 * 15 14 13 26 26 H 1.09002 * 113.61408 * 270.79943 * 15 14 13 27 27 H 1.08993 * 113.61491 * 89.15923 * 16 15 14 28 28 H 1.09000 * 113.61138 * 220.06261 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9295 -3.5551 -0.8424 12 7 3.0084 -3.6538 1.2547 13 6 1.4846 -4.9835 -0.1263 14 6 2.3973 -6.2212 -0.1366 15 6 1.4711 -6.7978 -1.2205 16 6 1.1073 -5.3461 -1.5743 17 1 -0.4851 0.8400 -0.0004 18 1 0.6241 -2.5567 -0.8904 19 1 0.6246 -2.5571 0.8896 20 1 3.5701 -2.8191 1.3310 21 1 2.3962 -3.7517 2.0506 22 1 0.6517 -5.0605 0.5725 23 1 2.3804 -6.7839 0.7967 24 1 3.4077 -6.0156 -0.4900 25 1 2.0024 -7.3210 -2.0156 26 1 0.6357 -7.3723 -0.8204 27 1 1.7643 -4.9009 -2.3213 28 1 0.0504 -5.2035 -1.7998 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259119226.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -24.374741 kcal Electronic energy + Delta-G solvation = -9800.737130 eV Core-core repulsion = 8043.406004 eV Total energy + Delta-G solvation = -1757.331126 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.92835 -36.24114 -34.22108 -29.92860 -27.60525 -26.28262 -24.71044 -21.55128 -20.31421 -18.53244 -16.65130 -16.51918 -16.26416 -15.30145 -14.54484 -14.46021 -14.06521 -13.26078 -13.20543 -12.91351 -12.66335 -12.46192 -12.10764 -11.86220 -11.51825 -11.21303 -11.01819 -10.72208 -10.60984 -9.29550 -8.22643 -6.34570 1.38125 1.38773 1.49876 2.37880 3.10082 3.71486 3.89652 3.95917 4.08569 4.38535 4.59992 4.74359 4.93229 4.99341 5.01646 5.03844 5.15367 5.25486 5.39397 5.48763 5.59778 5.76224 5.78731 6.18401 6.48548 6.77566 6.83458 7.35363 8.88635 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.083848 B = 0.011299 C = 0.010608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.858295 B = 2477.432169 C = 2638.803827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.002 3.998 10 C 0.113 3.887 11 H 0.055 0.945 12 N -0.828 5.828 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.130 4.130 16 C -0.139 4.139 17 H 0.262 0.738 18 H -0.012 1.012 19 H -0.014 1.014 20 H 0.337 0.663 21 H 0.331 0.669 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.957 -8.901 -0.605 9.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.037 4.037 10 C 0.001 3.999 11 H 0.074 0.926 12 N -0.354 5.354 13 C -0.129 4.129 14 C -0.147 4.147 15 C -0.168 4.168 16 C -0.177 4.177 17 H 0.071 0.929 18 H 0.006 0.994 19 H 0.004 0.996 20 H 0.149 0.851 21 H 0.142 0.858 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.182 -9.463 -0.888 10.384 hybrid contribution -0.676 2.140 0.194 2.252 sum 3.506 -7.324 -0.694 8.149 Atomic orbital electron populations 1.70109 1.07904 1.27684 1.51689 1.25980 0.95688 1.03386 0.94752 0.85452 0.78745 0.78508 0.78368 1.20041 1.21010 1.18467 1.21625 0.93397 0.92175 1.50407 0.92011 1.19726 0.95034 0.94311 0.94583 1.21302 0.93375 0.92937 0.92299 0.92646 1.59208 1.27567 1.44827 1.03828 1.22592 0.98330 0.94451 0.97507 1.22641 0.97773 0.95304 0.98980 1.22821 0.99806 0.95088 0.99037 1.22942 1.00773 0.97736 0.96243 0.92884 0.99380 0.99556 0.85067 0.85821 0.91110 0.91374 0.90610 0.90292 0.89502 0.90830 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.91 15 2 C 0.00 -0.02 5.46 84.66 0.46 0.45 15 3 Si 0.96 44.25 29.54 68.60 2.03 46.28 15 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 7 C -0.54 -30.18 8.55 25.60 0.22 -29.96 15 8 H 0.06 3.31 7.14 -2.91 -0.02 3.29 15 9 C 0.00 0.11 4.62 29.85 0.14 0.25 15 10 C 0.11 4.70 2.52 44.91 0.11 4.81 15 11 H 0.06 2.40 7.96 -2.38 -0.02 2.39 15 12 N -0.83 -31.41 8.95 -168.69 -1.51 -32.92 15 13 C -0.11 -3.86 3.29 -10.21 -0.03 -3.89 15 14 C -0.11 -3.12 7.40 31.12 0.23 -2.89 15 15 C -0.13 -3.26 8.08 31.12 0.25 -3.00 15 16 C -0.14 -4.41 7.65 31.18 0.24 -4.18 15 17 H 0.26 15.14 8.31 -92.71 -0.77 14.37 15 18 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 15 19 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 15 20 H 0.34 13.22 7.90 -89.70 -0.71 12.51 15 21 H 0.33 12.20 9.00 -89.70 -0.81 11.39 15 22 H 0.07 2.57 8.14 -2.39 -0.02 2.56 15 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 15 24 H 0.08 2.21 8.10 -2.39 -0.02 2.19 15 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.07 2.39 7.98 -2.39 -0.02 2.37 15 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 15 Total: -1.00 -61.64 234.04 2.04 -59.60 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.38 Total: 22.37 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 1.62 Total: -38.42 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -1.22 Total: -89.83 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -61.64 2.04 -59.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259119226.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.224 kcal (2) G-P(sol) polarization free energy of solvation -61.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds