Wall clock time and date at job start Mon Mar 30 2020 01:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.35585 * 2 1 4 4 C 1.54595 * 110.30968 * 237.85835 * 2 1 3 5 5 C 1.54940 * 102.92032 * 263.04619 * 4 2 1 6 6 N 1.48537 * 103.22560 * 322.57982 * 5 4 2 7 7 C 1.47904 * 105.81495 * 39.21164 * 6 5 4 8 8 H 1.09000 * 110.08122 * 94.11318 * 7 6 5 9 9 C 1.50706 * 109.91229 * 215.31157 * 7 6 5 10 10 H 1.08005 * 119.99758 * 117.59350 * 9 7 6 11 11 C 1.37871 * 120.00102 * 297.59234 * 9 7 6 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47483 * 269.99808 * 13 11 9 15 15 H 1.48499 * 109.47134 * 30.00322 * 13 11 9 16 16 H 1.48507 * 109.46904 * 150.00145 * 13 11 9 17 17 H 1.09007 * 109.46959 * 297.86347 * 1 2 3 18 18 H 1.09002 * 109.46922 * 57.85569 * 1 2 3 19 19 H 1.08994 * 109.47742 * 177.85887 * 1 2 3 20 20 H 1.09001 * 109.47312 * 182.14175 * 3 2 1 21 21 H 1.09003 * 109.47336 * 302.14586 * 3 2 1 22 22 H 1.09008 * 109.46770 * 62.14035 * 3 2 1 23 23 H 1.09005 * 110.71957 * 21.39627 * 4 2 1 24 24 H 1.09000 * 110.72548 * 144.68235 * 4 2 1 25 25 H 1.09000 * 110.66825 * 81.01701 * 5 4 2 26 26 H 1.08997 * 110.66358 * 203.98150 * 5 4 2 27 27 H 1.00893 * 111.00144 * 278.70017 * 6 5 4 28 28 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0622 1.4345 0.0000 4 6 2.0666 -0.7713 -1.2276 5 6 2.3583 -2.1797 -0.6515 6 7 2.8809 -1.8891 0.7082 7 6 2.0644 -0.7684 1.2228 8 1 1.2322 -1.1518 1.8132 9 6 2.9172 0.1419 2.0686 10 1 3.0693 1.1692 1.7719 11 6 3.5032 -0.3367 3.2212 12 7 3.3185 -1.5878 3.5823 13 14 4.5608 0.7914 4.2691 14 1 5.9721 0.7107 3.8142 15 1 4.0768 2.1889 4.1355 16 1 4.4744 0.3713 5.6909 17 1 -0.3633 0.4803 0.9086 18 1 -0.3633 0.5468 -0.8702 19 1 -0.3634 -1.0269 -0.0384 20 1 3.1514 1.4179 -0.0384 21 1 1.6759 1.9653 -0.8701 22 1 1.7383 1.9421 0.9086 23 1 1.3102 -0.8241 -2.0108 24 1 2.9806 -0.3112 -1.6030 25 1 1.4431 -2.7690 -0.5941 26 1 3.1082 -2.6936 -1.2529 27 1 3.8577 -1.6391 0.6743 28 1 2.7696 -2.1737 3.0378 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259557105.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:44 Heat of formation + Delta-G solvation = -29.948740 kcal Electronic energy + Delta-G solvation = -10361.756353 eV Core-core repulsion = 8604.183521 eV Total energy + Delta-G solvation = -1757.572832 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.18710 -34.74191 -33.67647 -30.01274 -28.37916 -26.48375 -24.87924 -22.44495 -20.08111 -18.34123 -16.60743 -16.15533 -15.54664 -14.93873 -14.76873 -14.24323 -14.10537 -13.50587 -12.96533 -12.62236 -12.46026 -12.29016 -12.00431 -11.94022 -11.72597 -11.34357 -11.23730 -10.46798 -10.25600 -9.10736 -8.40666 -6.21168 1.55515 1.63760 1.80200 2.63916 3.29004 3.78084 3.88979 4.02635 4.28317 4.51172 4.51722 4.70925 4.80961 4.86516 4.92357 5.00346 5.08459 5.17399 5.36904 5.42367 5.47881 5.68206 6.04668 6.25481 6.54063 6.74339 6.98311 7.67370 8.96843 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.057946 B = 0.018076 C = 0.015889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.091785 B = 1548.665165 C = 1761.814583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.091 4.091 3 C -0.106 4.106 4 C -0.135 4.135 5 C 0.037 3.963 6 N -0.689 5.689 7 C 0.193 3.807 8 H -0.009 1.009 9 C -0.630 4.630 10 H 0.070 0.930 11 C -0.024 4.024 12 N -0.933 5.933 13 Si 1.111 2.889 14 H -0.277 1.277 15 H -0.273 1.273 16 H -0.291 1.291 17 H 0.039 0.961 18 H 0.070 0.930 19 H 0.045 0.955 20 H 0.041 0.959 21 H 0.053 0.947 22 H 0.042 0.958 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.324 0.676 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 3.904 -8.304 9.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.093 4.093 3 C -0.163 4.163 4 C -0.173 4.173 5 C -0.093 4.093 6 N -0.317 5.317 7 C 0.085 3.915 8 H 0.009 0.991 9 C -0.669 4.669 10 H 0.088 0.912 11 C -0.226 4.226 12 N -0.570 5.570 13 Si 0.935 3.065 14 H -0.203 1.203 15 H -0.198 1.198 16 H -0.217 1.217 17 H 0.058 0.942 18 H 0.089 0.911 19 H 0.064 0.936 20 H 0.060 0.940 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.140 0.860 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.459 3.390 -6.567 7.533 hybrid contribution -0.677 0.375 -1.564 1.745 sum -2.136 3.765 -8.132 9.212 Atomic orbital electron populations 1.21722 0.94279 1.00853 1.01182 1.21766 0.95705 0.96377 0.95477 1.21657 0.99792 0.95084 0.99774 1.23105 1.00878 0.96322 0.97042 1.23116 0.99922 0.96309 0.89961 1.62957 1.06796 1.41909 1.20051 1.19905 0.92136 0.87327 0.92142 0.99091 1.22894 1.34248 0.99423 1.10317 0.91188 1.27073 0.98625 0.98770 0.98092 1.70696 1.37996 1.06619 1.41682 0.82998 0.75166 0.73761 0.74555 1.20294 1.19847 1.21705 0.94211 0.91093 0.93583 0.93976 0.92766 0.93939 0.89873 0.92030 0.91751 0.90583 0.86033 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 8.21 71.98 0.59 -3.71 15 2 C -0.09 -3.64 0.96 -51.30 -0.05 -3.69 15 3 C -0.11 -4.04 6.91 71.98 0.50 -3.54 15 4 C -0.13 -4.58 6.16 31.80 0.20 -4.39 15 5 C 0.04 1.36 7.55 86.65 0.65 2.02 15 6 N -0.69 -33.11 6.20 -484.01 -3.00 -36.11 15 7 C 0.19 9.73 2.48 44.31 0.11 9.84 15 8 H -0.01 -0.51 7.52 -2.39 -0.02 -0.52 15 9 C -0.63 -34.54 7.50 25.60 0.19 -34.35 15 10 H 0.07 3.70 4.67 -2.91 -0.01 3.69 15 11 C -0.02 -1.36 5.41 84.65 0.46 -0.90 15 12 N -0.93 -58.00 13.54 21.45 0.29 -57.71 15 13 Si 1.11 50.68 29.90 68.60 2.05 52.74 15 14 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 15 H -0.27 -11.55 7.11 99.48 0.71 -10.85 15 16 H -0.29 -13.42 7.11 99.48 0.71 -12.71 15 17 H 0.04 1.46 8.14 -2.38 -0.02 1.44 15 18 H 0.07 2.02 8.14 -2.39 -0.02 2.01 15 19 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.04 1.69 7.19 -2.39 -0.02 1.67 15 21 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.04 1.74 7.02 -2.38 -0.02 1.72 15 23 H 0.08 2.37 7.85 -2.38 -0.02 2.35 15 24 H 0.06 2.05 7.84 -2.39 -0.02 2.03 15 25 H 0.06 2.35 8.14 -2.39 -0.02 2.33 15 26 H 0.08 2.48 8.14 -2.39 -0.02 2.46 15 27 H 0.32 16.28 8.39 -89.70 -0.75 15.53 15 28 H 0.27 17.42 6.50 -92.71 -0.60 16.81 15 Total: -1.00 -62.41 221.98 2.54 -59.88 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.55 Total: 19.94 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 2.65 Total: -38.73 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -2.71 Total: -93.82 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.74 kcal Total: -62.41 2.54 -59.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259557105.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.929 kcal (2) G-P(sol) polarization free energy of solvation -62.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds