Wall clock time and date at job start Mon Mar 30 2020 02:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.52933 * 2 1 4 4 C 1.53121 * 109.57452 * 120.15545 * 2 1 3 5 5 C 1.53044 * 109.27467 * 62.28300 * 4 2 1 6 6 N 1.46847 * 109.52516 * 59.18169 * 5 4 2 7 7 C 1.46848 * 111.19556 * 298.25761 * 6 5 4 8 8 H 1.08999 * 109.45956 * 301.72471 * 7 6 5 9 9 C 1.50696 * 109.45958 * 181.75131 * 7 6 5 10 10 H 1.08007 * 119.99646 * 239.99666 * 9 7 6 11 11 C 1.37869 * 120.00534 * 59.99958 * 9 7 6 12 12 N 1.31521 * 119.99904 * 359.97438 * 11 9 7 13 13 Si 1.86806 * 120.00184 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.46869 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47235 * 119.99682 * 13 11 9 16 16 H 1.48502 * 109.46890 * 239.99531 * 13 11 9 17 17 C 1.53034 * 109.52504 * 61.74015 * 7 6 5 18 18 H 1.08997 * 109.47348 * 180.12638 * 1 2 3 19 19 H 1.09000 * 109.47677 * 300.13062 * 1 2 3 20 20 H 1.09009 * 109.47161 * 60.12662 * 1 2 3 21 21 H 1.08996 * 109.50720 * 182.22084 * 4 2 1 22 22 H 1.08993 * 109.50411 * 302.34552 * 4 2 1 23 23 H 1.08999 * 109.45943 * 299.16193 * 5 4 2 24 24 H 1.09003 * 109.46209 * 179.19733 * 5 4 2 25 25 H 1.00901 * 110.99839 * 174.16251 * 6 5 4 26 26 H 0.96993 * 120.00000 * 180.02562 * 12 11 9 27 27 H 1.09001 * 109.49974 * 60.76401 * 17 7 6 28 28 H 1.08998 * 109.50670 * 180.87927 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0429 -0.7247 1.2475 5 6 1.5791 -2.1828 1.2112 6 7 2.0949 -2.8319 -0.0007 7 6 1.5779 -2.1823 -1.2120 8 1 0.4885 -2.2169 -1.2058 9 6 2.0962 -2.9043 -2.4290 10 1 2.6968 -2.3764 -3.1550 11 6 1.8037 -4.2386 -2.6158 12 7 1.0726 -4.8816 -1.7315 13 14 2.4467 -5.1336 -4.1241 14 1 3.2379 -4.1933 -4.9577 15 1 3.3097 -6.2646 -3.6981 16 1 1.3032 -5.6544 -4.9156 17 6 2.0417 -0.7244 -1.2482 18 1 -0.3634 -1.0276 0.0023 19 1 -0.3634 0.5158 0.8888 20 1 -0.3634 0.5119 -0.8912 21 1 3.1322 -0.6898 1.2666 22 1 1.6469 -0.2390 2.1392 23 1 0.4897 -2.2172 1.2061 24 1 1.9547 -2.7053 2.0910 25 1 1.8828 -3.8184 -0.0008 26 1 0.8671 -5.8204 -1.8627 27 1 3.1309 -0.6894 -1.2684 28 1 1.6448 -0.2383 -2.1394 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259610211.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:27 Heat of formation + Delta-G solvation = -39.413674 kcal Electronic energy + Delta-G solvation = -10243.250453 eV Core-core repulsion = 8485.267190 eV Total energy + Delta-G solvation = -1757.983263 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.70554 -35.15760 -33.16263 -31.62136 -28.03983 -26.99062 -23.65787 -22.86509 -19.14738 -18.67690 -17.03707 -16.11403 -15.53577 -15.35779 -14.48309 -14.38103 -14.26912 -13.63449 -13.00537 -12.82548 -12.55016 -12.37336 -12.10131 -11.88629 -11.64400 -11.41620 -10.85730 -10.77774 -10.60317 -8.68857 -8.16691 -6.28008 1.40382 1.42424 1.54318 2.42583 3.09221 3.95231 4.04830 4.13127 4.33059 4.59838 4.67911 4.75383 4.88367 4.89977 4.99764 5.10149 5.18469 5.29265 5.34554 5.45563 5.51716 5.67102 5.83467 6.23647 6.67757 7.04074 7.17356 7.44044 8.91891 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.076072 B = 0.014885 C = 0.013921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.981633 B = 1880.604946 C = 2010.833538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.083 0.917 4 C -0.100 4.100 5 C 0.049 3.951 6 N -0.696 5.696 7 C 0.214 3.786 8 H -0.034 1.034 9 C -0.531 4.531 10 H 0.053 0.947 11 C 0.016 3.984 12 N -0.927 5.927 13 Si 0.963 3.037 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.280 1.280 17 C -0.097 4.097 18 H 0.031 0.969 19 H 0.071 0.929 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.082 0.918 23 H 0.006 0.994 24 H 0.063 0.937 25 H 0.345 0.655 26 H 0.265 0.735 27 H 0.047 0.953 28 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.175 6.469 3.663 7.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.101 0.899 4 C -0.138 4.138 5 C -0.081 4.081 6 N -0.331 5.331 7 C 0.106 3.894 8 H -0.016 1.016 9 C -0.570 4.570 10 H 0.072 0.928 11 C -0.182 4.182 12 N -0.568 5.568 13 Si 0.788 3.212 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.206 1.206 17 C -0.135 4.135 18 H 0.050 0.950 19 H 0.090 0.910 20 H 0.071 0.929 21 H 0.079 0.921 22 H 0.100 0.900 23 H 0.024 0.976 24 H 0.082 0.918 25 H 0.166 0.834 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.684 6.665 3.696 7.651 hybrid contribution -0.776 -1.203 -0.802 1.641 sum -0.091 5.462 2.894 6.182 Atomic orbital electron populations 1.21841 0.95564 1.00691 1.01787 1.21197 0.95784 0.99096 0.95005 0.89913 1.21546 1.00663 0.94022 0.97591 1.21987 0.95789 0.96408 0.93888 1.60758 1.62197 1.08586 1.01556 1.18950 0.91031 0.91197 0.88269 1.01625 1.21648 1.32677 0.96026 1.06614 0.92841 1.25799 0.94642 0.98333 0.99433 1.69802 1.39365 1.10542 1.37066 0.85438 0.78095 0.78326 0.79299 1.19317 1.20472 1.20570 1.21571 0.99535 0.95632 0.96793 0.94986 0.91042 0.92865 0.92086 0.89974 0.97554 0.91824 0.83420 0.92612 0.93458 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 8.62 71.98 0.62 -4.10 15 2 C -0.09 -3.22 3.21 -10.72 -0.03 -3.25 15 3 H 0.08 2.43 8.14 -2.39 -0.02 2.41 15 4 C -0.10 -3.40 5.60 30.65 0.17 -3.23 15 5 C 0.05 2.01 6.30 86.33 0.54 2.55 15 6 N -0.70 -35.14 6.49 -495.56 -3.22 -38.36 15 7 C 0.21 11.22 2.15 44.19 0.09 11.31 15 8 H -0.03 -1.95 6.52 -2.39 -0.02 -1.96 15 9 C -0.53 -30.39 8.76 25.60 0.22 -30.17 15 10 H 0.05 3.02 7.74 -2.91 -0.02 3.00 15 11 C 0.02 0.92 5.32 84.65 0.45 1.37 15 12 N -0.93 -53.82 11.48 21.45 0.25 -53.57 15 13 Si 0.96 44.44 29.54 68.60 2.03 46.47 15 14 H -0.27 -12.10 7.11 99.48 0.71 -11.40 15 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 17 C -0.10 -4.24 4.82 30.65 0.15 -4.09 15 18 H 0.03 1.26 4.93 -2.39 -0.01 1.24 15 19 H 0.07 1.93 8.14 -2.39 -0.02 1.92 15 20 H 0.05 1.68 8.14 -2.38 -0.02 1.66 15 21 H 0.06 2.08 8.14 -2.39 -0.02 2.06 15 22 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 23 H 0.01 0.27 6.51 -2.39 -0.02 0.25 15 24 H 0.06 2.37 8.14 -2.39 -0.02 2.35 15 25 H 0.34 19.07 6.65 -89.69 -0.60 18.48 15 26 H 0.26 14.52 8.31 -92.71 -0.77 13.75 15 27 H 0.05 2.09 8.14 -2.39 -0.02 2.08 15 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 15 Total: -1.00 -60.57 219.41 1.81 -58.76 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.53 Total: 16.30 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 2.22 Total: -29.60 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -2.97 Total: -91.93 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -60.57 1.81 -58.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259610211.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.351 kcal (2) G-P(sol) polarization free energy of solvation -60.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds