Wall clock time and date at job start Mon Mar 30 2020 02:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46465 * 2 1 4 4 C 1.50697 * 109.47160 * 240.00022 * 2 1 3 5 5 H 1.08001 * 119.99566 * 274.99827 * 4 2 1 6 6 C 1.37870 * 119.99981 * 94.99495 * 4 2 1 7 7 N 1.31515 * 119.99962 * 184.89639 * 6 4 2 8 8 Si 1.86795 * 120.00299 * 4.89903 * 6 4 2 9 9 H 1.48507 * 109.47279 * 84.80319 * 8 6 4 10 10 H 1.48497 * 109.47514 * 204.80032 * 8 6 4 11 11 H 1.48500 * 109.47020 * 324.80594 * 8 6 4 12 12 C 1.52997 * 109.46846 * 119.99820 * 2 1 3 13 13 H 1.08997 * 110.29180 * 59.30533 * 12 2 1 14 14 C 1.54263 * 110.32000 * 181.43143 * 12 2 1 15 15 C 1.54384 * 105.06584 * 118.99874 * 14 12 2 16 16 N 1.48560 * 104.58977 * 23.84667 * 15 14 12 17 17 C 1.48555 * 104.22912 * 320.52283 * 16 15 14 18 18 H 1.08996 * 109.46720 * 175.14804 * 1 2 3 19 19 H 1.09001 * 109.47000 * 295.14041 * 1 2 3 20 20 H 1.08996 * 109.47177 * 55.14210 * 1 2 3 21 21 H 0.97000 * 120.00615 * 179.97438 * 7 6 4 22 22 H 1.09007 * 110.31843 * 237.89045 * 14 12 2 23 23 H 1.09002 * 110.32577 * 359.97438 * 14 12 2 24 24 H 1.08998 * 110.41315 * 142.62598 * 15 14 12 25 25 H 1.08994 * 110.40895 * 265.07672 * 15 14 12 26 26 H 1.00904 * 110.99715 * 80.08252 * 16 15 14 27 27 H 1.09005 * 110.40706 * 280.70916 * 17 16 15 28 28 H 1.08992 * 110.41704 * 158.26136 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1356 -1.7855 -1.2289 6 6 2.3602 0.0121 -2.3580 7 7 2.7063 -0.6132 -3.4620 8 14 2.3129 1.8790 -2.3176 9 1 3.5980 2.3953 -1.7816 10 1 2.1059 2.3988 -3.6932 11 1 1.1973 2.3271 -1.4459 12 6 2.0400 -0.7212 1.2493 13 1 1.6740 -1.7477 1.2690 14 6 3.5820 -0.7014 1.2873 15 6 3.9418 0.0604 2.5810 16 7 2.7494 -0.0984 3.4527 17 6 1.5977 0.0304 2.5232 18 1 -0.3632 -1.0240 -0.0869 19 1 -0.3633 0.4366 0.9303 20 1 -0.3633 0.5873 -0.8432 21 1 2.9365 -0.1050 -4.2555 22 1 3.9728 -1.7184 1.3258 23 1 3.9756 -0.1783 0.4158 24 1 4.8189 -0.3833 3.0520 25 1 4.1171 1.1143 2.3652 26 1 2.7498 -1.0004 3.9051 27 1 1.4064 1.0797 2.2983 28 1 0.7101 -0.4357 2.9507 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259777034.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:01 Heat of formation + Delta-G solvation = -16.153830 kcal Electronic energy + Delta-G solvation = -10130.021754 eV Core-core repulsion = 8373.047114 eV Total energy + Delta-G solvation = -1756.974640 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.32767 -33.96221 -31.50776 -28.81148 -27.22468 -25.11211 -21.53693 -20.83315 -18.62751 -16.91961 -16.08329 -14.47137 -14.01142 -13.36873 -13.24158 -12.67426 -12.32747 -11.73047 -11.54410 -11.19250 -10.93145 -10.69670 -10.63163 -10.21351 -9.81044 -9.63336 -9.27577 -8.95349 -8.53341 -8.20986 -6.05607 -4.03092 3.29227 3.37963 3.40498 4.43811 4.73675 5.25887 5.43314 5.49835 5.73105 5.87736 6.04218 6.15501 6.36036 6.43091 6.47797 6.53737 6.74057 6.83568 6.90417 7.02028 7.22429 7.31184 7.53580 7.69520 7.81556 8.55636 8.99492 9.58228 11.08116 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.055042 B = 0.016696 C = 0.016002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.576863 B = 1676.603425 C = 1749.346206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.018 3.982 3 H 0.030 0.970 4 C -0.504 4.504 5 H 0.070 0.930 6 C 0.068 3.932 7 N -0.904 5.904 8 Si 0.875 3.125 9 H -0.277 1.277 10 H -0.291 1.291 11 H -0.265 1.265 12 C -0.102 4.102 13 H 0.060 0.940 14 C -0.140 4.140 15 C 0.035 3.965 16 N -0.677 5.677 17 C 0.039 3.961 18 H 0.043 0.957 19 H 0.023 0.977 20 H 0.040 0.960 21 H 0.262 0.738 22 H 0.053 0.947 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.329 0.671 27 H 0.074 0.926 28 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.310 1.851 9.371 9.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.002 4.002 3 H 0.048 0.952 4 C -0.542 4.542 5 H 0.088 0.912 6 C -0.133 4.133 7 N -0.543 5.543 8 Si 0.703 3.297 9 H -0.202 1.202 10 H -0.217 1.217 11 H -0.190 1.190 12 C -0.122 4.122 13 H 0.078 0.922 14 C -0.179 4.179 15 C -0.095 4.095 16 N -0.303 5.303 17 C -0.091 4.091 18 H 0.062 0.938 19 H 0.042 0.958 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.102 0.898 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.143 0.857 27 H 0.092 0.908 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.266 2.576 9.496 9.843 hybrid contribution 0.036 0.052 -0.800 0.802 sum -0.231 2.629 8.696 9.087 Atomic orbital electron populations 1.22013 0.99184 1.00187 0.98258 1.19201 0.92031 0.95639 0.93296 0.95189 1.20978 1.42821 0.95268 0.95124 0.91194 1.25058 0.94802 0.98087 0.95322 1.69910 1.46957 1.35699 1.01684 0.86894 0.79074 0.86780 0.76964 1.20247 1.21734 1.18992 1.22439 0.94600 0.99383 0.95804 0.92171 1.22803 0.96606 1.00030 0.98510 1.23052 0.93033 1.00789 0.92577 1.63383 1.03081 1.36086 1.27749 1.23191 0.93104 1.01025 0.91748 0.93784 0.95772 0.94113 0.92782 0.92818 0.89839 0.91839 0.90945 0.85735 0.90757 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.06 37.16 0.34 -2.61 15 2 C 0.02 0.41 1.27 -91.77 -0.12 0.29 15 3 H 0.03 0.71 5.28 -51.93 -0.27 0.44 15 4 C -0.50 -13.89 7.85 -34.44 -0.27 -14.16 15 5 H 0.07 2.11 8.06 -52.49 -0.42 1.69 15 6 C 0.07 1.95 5.47 -17.82 -0.10 1.86 15 7 N -0.90 -27.64 13.96 55.43 0.77 -26.87 15 8 Si 0.88 21.68 26.99 -169.99 -4.59 17.09 15 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 11 H -0.27 -6.33 6.82 56.52 0.39 -5.94 15 12 C -0.10 -2.01 2.62 -89.23 -0.23 -2.25 15 13 H 0.06 1.21 8.14 -51.93 -0.42 0.78 15 14 C -0.14 -2.67 6.23 -25.34 -0.16 -2.83 15 15 C 0.04 0.57 7.47 -2.18 -0.02 0.55 15 16 N -0.68 -10.65 7.62 -109.66 -0.84 -11.49 15 17 C 0.04 0.66 5.91 -2.18 -0.01 0.65 15 18 H 0.04 0.92 8.14 -51.93 -0.42 0.49 15 19 H 0.02 0.44 7.16 -51.93 -0.37 0.06 15 20 H 0.04 0.89 8.14 -51.93 -0.42 0.47 15 21 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.08 1.81 7.22 -51.93 -0.37 1.43 15 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.33 4.56 8.92 -39.29 -0.35 4.21 15 27 H 0.07 1.32 7.79 -51.93 -0.40 0.92 15 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 LS Contribution 225.21 15.07 3.39 3.39 Total: -1.00 -29.25 225.21 -6.13 -35.38 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.31 Total: 0.98 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -0.57 Total: -18.50 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.06 Total: -38.35 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.59 Total: 17.09 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -29.25 -6.13 -35.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259777034.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.227 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds