Wall clock time and date at job start Mon Mar 30 2020 02:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46465 * 2 1 4 4 C 1.50697 * 109.47160 * 240.00022 * 2 1 3 5 5 H 1.08001 * 119.99566 * 274.99827 * 4 2 1 6 6 C 1.37870 * 119.99981 * 94.99495 * 4 2 1 7 7 N 1.31515 * 119.99962 * 184.89639 * 6 4 2 8 8 Si 1.86795 * 120.00299 * 4.89903 * 6 4 2 9 9 H 1.48507 * 109.47279 * 84.80319 * 8 6 4 10 10 H 1.48497 * 109.47514 * 204.80032 * 8 6 4 11 11 H 1.48500 * 109.47020 * 324.80594 * 8 6 4 12 12 C 1.52997 * 109.46846 * 119.99820 * 2 1 3 13 13 H 1.08997 * 110.29180 * 59.30533 * 12 2 1 14 14 C 1.54263 * 110.32000 * 181.43143 * 12 2 1 15 15 C 1.54384 * 105.06584 * 118.99874 * 14 12 2 16 16 N 1.48560 * 104.58977 * 23.84667 * 15 14 12 17 17 C 1.48555 * 104.22912 * 320.52283 * 16 15 14 18 18 H 1.08996 * 109.46720 * 175.14804 * 1 2 3 19 19 H 1.09001 * 109.47000 * 295.14041 * 1 2 3 20 20 H 1.08996 * 109.47177 * 55.14210 * 1 2 3 21 21 H 0.97000 * 120.00615 * 179.97438 * 7 6 4 22 22 H 1.09007 * 110.31843 * 237.89045 * 14 12 2 23 23 H 1.09002 * 110.32577 * 359.97438 * 14 12 2 24 24 H 1.08998 * 110.41315 * 142.62598 * 15 14 12 25 25 H 1.08994 * 110.40895 * 265.07672 * 15 14 12 26 26 H 1.00904 * 110.99715 * 80.08252 * 16 15 14 27 27 H 1.09005 * 110.40706 * 280.70916 * 17 16 15 28 28 H 1.08992 * 110.41704 * 158.26136 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1356 -1.7855 -1.2289 6 6 2.3602 0.0121 -2.3580 7 7 2.7063 -0.6132 -3.4620 8 14 2.3129 1.8790 -2.3176 9 1 3.5980 2.3953 -1.7816 10 1 2.1059 2.3988 -3.6932 11 1 1.1973 2.3271 -1.4459 12 6 2.0400 -0.7212 1.2493 13 1 1.6740 -1.7477 1.2690 14 6 3.5820 -0.7014 1.2873 15 6 3.9418 0.0604 2.5810 16 7 2.7494 -0.0984 3.4527 17 6 1.5977 0.0304 2.5232 18 1 -0.3632 -1.0240 -0.0869 19 1 -0.3633 0.4366 0.9303 20 1 -0.3633 0.5873 -0.8432 21 1 2.9365 -0.1050 -4.2555 22 1 3.9728 -1.7184 1.3258 23 1 3.9756 -0.1783 0.4158 24 1 4.8189 -0.3833 3.0520 25 1 4.1171 1.1143 2.3652 26 1 2.7498 -1.0004 3.9051 27 1 1.4064 1.0797 2.2983 28 1 0.7101 -0.4357 2.9507 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259777034.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:01 Heat of formation + Delta-G solvation = -37.127891 kcal Electronic energy + Delta-G solvation = -10130.931258 eV Core-core repulsion = 8373.047114 eV Total energy + Delta-G solvation = -1757.884144 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.80681 -35.79255 -33.53831 -30.24556 -28.76479 -27.11223 -23.09647 -22.37370 -20.31438 -19.03320 -17.40619 -16.44729 -15.64414 -14.93698 -14.78404 -14.56125 -14.13034 -13.41901 -13.05738 -12.85492 -12.67767 -12.43199 -12.16712 -11.90108 -11.64540 -11.36336 -11.01068 -10.87975 -10.66901 -9.57806 -8.27241 -6.28182 1.33433 1.34888 1.45521 2.35321 3.09667 3.44560 3.97540 4.05870 4.32071 4.42633 4.66098 4.66695 4.75074 4.88563 4.96560 5.09795 5.12008 5.14099 5.31684 5.43221 5.53797 5.73901 5.74607 5.86565 6.34774 6.53067 6.77887 7.36167 8.90256 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.055042 B = 0.016696 C = 0.016002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.576863 B = 1676.603425 C = 1749.346206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.015 3.985 3 H 0.028 0.972 4 C -0.499 4.499 5 H 0.026 0.974 6 C 0.007 3.993 7 N -0.955 5.955 8 Si 0.937 3.063 9 H -0.268 1.268 10 H -0.291 1.291 11 H -0.245 1.245 12 C -0.103 4.103 13 H 0.052 0.948 14 C -0.143 4.143 15 C 0.044 3.956 16 N -0.670 5.670 17 C 0.048 3.952 18 H 0.039 0.961 19 H 0.060 0.940 20 H 0.029 0.971 21 H 0.263 0.737 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.342 0.658 27 H 0.071 0.929 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.782 3.218 11.546 12.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.005 4.005 3 H 0.046 0.954 4 C -0.537 4.537 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.596 5.596 8 Si 0.762 3.238 9 H -0.193 1.193 10 H -0.218 1.218 11 H -0.169 1.169 12 C -0.123 4.123 13 H 0.071 0.929 14 C -0.182 4.182 15 C -0.086 4.086 16 N -0.297 5.297 17 C -0.082 4.082 18 H 0.058 0.942 19 H 0.079 0.921 20 H 0.048 0.952 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.089 0.911 26 H 0.158 0.842 27 H 0.090 0.910 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.747 3.936 11.706 12.373 hybrid contribution 0.195 -0.496 -1.466 1.560 sum -0.552 3.440 10.241 10.817 Atomic orbital electron populations 1.21918 0.97418 1.00203 0.99744 1.19213 0.93412 0.95168 0.92674 0.95374 1.21236 1.41883 0.93528 0.97094 0.95549 1.25913 0.94829 1.03218 0.94884 1.70066 1.49192 1.37727 1.02643 0.85880 0.80018 0.80670 0.77236 1.19291 1.21781 1.16875 1.22384 0.95051 0.98985 0.95915 0.92942 1.22782 0.96235 1.00187 0.99021 1.23000 0.94182 1.00371 0.91018 1.63352 1.02309 1.37144 1.26849 1.23088 0.94325 1.00467 0.90285 0.94162 0.92106 0.95183 0.92819 0.92793 0.93134 0.89280 0.91109 0.84198 0.91016 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 9.06 71.98 0.65 -4.80 15 2 C 0.01 0.66 1.27 -11.54 -0.01 0.64 15 3 H 0.03 1.28 5.28 -2.39 -0.01 1.27 15 4 C -0.50 -28.12 7.85 25.60 0.20 -27.92 15 5 H 0.03 1.67 8.06 -2.91 -0.02 1.64 15 6 C 0.01 0.44 5.47 84.65 0.46 0.90 15 7 N -0.96 -60.27 13.96 21.44 0.30 -59.97 15 8 Si 0.94 44.60 26.99 68.60 1.85 46.45 15 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 10 H -0.29 -13.80 7.11 99.48 0.71 -13.10 15 11 H -0.25 -10.79 6.82 99.48 0.68 -10.11 15 12 C -0.10 -3.91 2.62 -9.90 -0.03 -3.93 15 13 H 0.05 2.05 8.14 -2.39 -0.02 2.03 15 14 C -0.14 -5.30 6.23 31.49 0.20 -5.10 15 15 C 0.04 1.29 7.47 86.45 0.65 1.94 15 16 N -0.67 -18.54 7.62 -500.86 -3.82 -22.36 15 17 C 0.05 1.46 5.91 86.45 0.51 1.97 15 18 H 0.04 1.62 8.14 -2.39 -0.02 1.60 15 19 H 0.06 2.00 7.16 -2.39 -0.02 1.99 15 20 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.26 15.61 8.31 -92.71 -0.77 14.84 15 22 H 0.05 1.94 8.14 -2.38 -0.02 1.92 15 23 H 0.05 2.19 7.22 -2.39 -0.02 2.17 15 24 H 0.09 2.17 8.14 -2.39 -0.02 2.15 15 25 H 0.07 2.13 8.14 -2.39 -0.02 2.11 15 26 H 0.34 8.12 8.92 -89.69 -0.80 7.32 15 27 H 0.07 2.26 7.79 -2.38 -0.02 2.24 15 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 Total: -1.00 -63.46 225.21 1.26 -62.20 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.30 Total: 9.97 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 2.63 Total: -36.30 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -3.52 Total: -82.32 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.85 Total: 46.45 kcal Total: -63.46 1.26 -62.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259777034.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.070 kcal (2) G-P(sol) polarization free energy of solvation -63.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds