Wall clock time and date at job start Mon Mar 30 2020 02:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.45306 * 2 1 4 4 C 1.53036 * 109.46139 * 119.97105 * 2 1 3 5 5 C 1.53120 * 109.27937 * 60.83363 * 4 2 1 6 6 H 1.09002 * 109.52655 * 297.69210 * 5 4 2 7 7 C 1.50698 * 109.52365 * 177.55833 * 5 4 2 8 8 H 1.07993 * 119.99871 * 354.64174 * 7 5 4 9 9 C 1.37877 * 119.99773 * 174.63813 * 7 5 4 10 10 N 1.31514 * 119.99956 * 162.99590 * 9 7 5 11 11 Si 1.86802 * 120.00195 * 342.98975 * 9 7 5 12 12 H 1.48502 * 109.47067 * 270.00312 * 11 9 7 13 13 H 1.48503 * 109.46986 * 30.00163 * 11 9 7 14 14 H 1.48496 * 109.47025 * 150.00388 * 11 9 7 15 15 C 1.53129 * 109.21134 * 57.62315 * 5 4 2 16 16 C 1.53040 * 109.27243 * 302.43951 * 15 5 4 17 17 N 1.46850 * 109.46197 * 240.02328 * 2 1 3 18 18 H 1.08994 * 109.46809 * 300.03142 * 1 2 3 19 19 H 1.09008 * 109.46791 * 60.03016 * 1 2 3 20 20 H 1.08997 * 109.47122 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.50442 * 300.89627 * 4 2 1 22 22 H 1.08995 * 109.53616 * 180.79891 * 4 2 1 23 23 H 0.96997 * 119.99857 * 354.70702 * 10 9 7 24 24 H 1.09000 * 109.50125 * 62.31773 * 15 5 4 25 25 H 1.08998 * 109.50312 * 182.43901 * 15 5 4 26 26 H 1.08995 * 109.41688 * 299.07079 * 16 15 5 27 27 H 1.09001 * 109.44997 * 179.12087 * 16 15 5 28 28 H 1.00895 * 111.00159 * 65.82539 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 1.5442 -2.1695 1.2357 6 1 0.4548 -2.1821 1.2684 7 6 2.0926 -2.9012 2.4336 8 1 2.7991 -2.4125 3.0880 9 6 1.6921 -4.1946 2.6941 10 7 2.3929 -4.9475 3.5137 11 14 0.1541 -4.8775 1.8830 12 1 -1.0235 -4.6030 2.7450 13 1 -0.0380 -4.2287 0.5611 14 1 0.3014 -6.3435 1.6982 15 6 2.0256 -2.8542 -0.0466 16 6 1.5173 -2.0706 -1.2590 17 7 2.0193 -0.6918 -1.1994 18 1 -0.3633 0.5143 0.8897 19 1 -0.3633 0.5134 -0.8903 20 1 -0.3633 -1.0276 0.0005 21 1 1.6637 -0.2163 2.1400 22 1 3.1298 -0.7092 1.2584 23 1 3.2317 -4.6208 3.8748 24 1 3.1153 -2.8770 -0.0599 25 1 1.6391 -3.8727 -0.0824 26 1 0.4275 -2.0607 -1.2531 27 1 1.8714 -2.5467 -2.1733 28 1 1.7761 -0.1820 -2.0354 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799166.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:23 Heat of formation + Delta-G solvation = -37.824745 kcal Electronic energy + Delta-G solvation = -10300.298115 eV Core-core repulsion = 8542.383754 eV Total energy + Delta-G solvation = -1757.914362 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.02723 -35.39677 -32.86135 -32.47536 -28.19014 -26.87389 -23.46022 -22.63856 -19.72852 -19.44366 -17.54662 -15.92147 -15.75502 -15.38690 -14.76283 -14.34352 -13.86580 -13.71219 -13.59747 -12.85971 -12.76109 -12.38963 -11.97444 -11.81219 -11.51849 -11.33770 -10.86665 -10.70961 -10.43813 -9.24932 -8.70737 -6.34452 1.45494 1.51467 1.70363 2.50989 3.06606 3.39818 4.05948 4.14650 4.33395 4.35875 4.49320 4.65243 4.80097 4.84201 4.86913 4.99523 5.06852 5.23210 5.28456 5.42729 5.53151 5.80964 6.03258 6.18618 6.19638 6.58212 6.73189 7.42601 8.63754 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.059878 B = 0.017843 C = 0.016763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.508678 B = 1568.836576 C = 1669.979796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 H 0.091 0.909 4 C -0.092 4.092 5 C 0.018 3.982 6 H 0.028 0.972 7 C -0.602 4.602 8 H 0.009 0.991 9 C -0.024 4.024 10 N -0.945 5.945 11 Si 1.085 2.915 12 H -0.274 1.274 13 H -0.235 1.235 14 H -0.288 1.288 15 C -0.113 4.113 16 C 0.060 3.940 17 N -0.688 5.688 18 H 0.061 0.939 19 H 0.073 0.927 20 H 0.049 0.951 21 H 0.047 0.953 22 H 0.033 0.967 23 H 0.250 0.750 24 H 0.034 0.966 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 8.065 -10.972 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.023 4.023 3 H 0.109 0.891 4 C -0.130 4.130 5 C -0.001 4.001 6 H 0.045 0.955 7 C -0.640 4.640 8 H 0.028 0.972 9 C -0.221 4.221 10 N -0.581 5.581 11 Si 0.905 3.095 12 H -0.200 1.200 13 H -0.158 1.158 14 H -0.214 1.214 15 C -0.151 4.151 16 C -0.070 4.070 17 N -0.320 5.320 18 H 0.080 0.920 19 H 0.092 0.908 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.331 6.586 -10.746 14.105 hybrid contribution 0.791 1.210 0.708 1.609 sum -5.541 7.796 -10.038 13.865 Atomic orbital electron populations 1.22499 0.96857 1.02013 1.02700 1.21548 0.93267 0.97393 0.90121 0.89069 1.21447 0.98965 0.96214 0.96395 1.19048 0.95499 0.93037 0.92471 0.95450 1.22345 1.28459 1.00764 1.12405 0.97249 1.27307 1.04558 0.94219 0.96036 1.70933 1.14519 1.38847 1.33791 0.83626 0.72514 0.75585 0.77740 1.20037 1.15820 1.21405 1.21903 0.99494 0.98265 0.95480 1.21941 0.97414 0.89484 0.98119 1.60357 1.63662 1.02900 1.05122 0.91970 0.90835 0.93198 0.93385 0.94812 0.94136 0.94746 0.93377 0.94327 0.89994 0.82929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.98 8.59 71.98 0.62 -4.36 15 2 C 0.09 2.70 3.68 44.94 0.17 2.86 15 3 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 4 C -0.09 -3.84 4.84 30.65 0.15 -3.69 15 5 C 0.02 0.88 1.40 -11.46 -0.02 0.86 15 6 H 0.03 1.27 5.13 -2.39 -0.01 1.26 15 7 C -0.60 -35.64 8.83 25.60 0.23 -35.41 15 8 H 0.01 0.60 7.99 -2.91 -0.02 0.58 15 9 C -0.02 -1.46 5.35 84.65 0.45 -1.01 15 10 N -0.94 -61.35 13.70 21.45 0.29 -61.06 15 11 Si 1.08 50.79 26.31 68.60 1.80 52.60 15 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 13 H -0.23 -9.52 5.50 99.48 0.55 -8.98 15 14 H -0.29 -13.46 7.11 99.48 0.71 -12.76 15 15 C -0.11 -4.91 4.82 30.65 0.15 -4.77 15 16 C 0.06 1.95 6.25 86.33 0.54 2.49 15 17 N -0.69 -20.71 6.65 -491.65 -3.27 -23.98 15 18 H 0.06 1.64 8.14 -2.39 -0.02 1.62 15 19 H 0.07 1.58 8.14 -2.38 -0.02 1.56 15 20 H 0.05 1.54 4.80 -2.39 -0.01 1.53 15 21 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 22 H 0.03 1.52 8.14 -2.39 -0.02 1.50 15 23 H 0.25 16.54 8.73 -92.71 -0.81 15.73 15 24 H 0.03 1.62 8.14 -2.39 -0.02 1.60 15 25 H 0.05 2.12 5.09 -2.39 -0.01 2.11 15 26 H 0.04 1.19 6.19 -2.39 -0.01 1.18 15 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 28 H 0.35 8.06 8.90 -89.70 -0.80 7.26 15 Total: -1.00 -67.31 213.95 1.25 -66.06 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.14 Total: 9.41 kcal Atomic # 6 Polarization: -45.31 SS G_CDS: 2.28 Total: -43.03 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.98 Total: -85.04 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 1.80 Total: 52.60 kcal Total: -67.31 1.25 -66.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799166.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.233 kcal (2) G-P(sol) polarization free energy of solvation -67.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds