Wall clock time and date at job start Mon Mar 30 2020 02:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.45567 * 2 1 4 4 C 1.53038 * 109.45900 * 240.02646 * 2 1 3 5 5 C 1.53119 * 109.27714 * 299.16418 * 4 2 1 6 6 H 1.09001 * 109.52404 * 62.25543 * 5 4 2 7 7 C 1.50710 * 109.51992 * 182.37906 * 5 4 2 8 8 H 1.07993 * 119.99896 * 5.30737 * 7 5 4 9 9 C 1.37876 * 119.99793 * 185.31013 * 7 5 4 10 10 N 1.31515 * 120.00270 * 9.55440 * 9 7 5 11 11 Si 1.86799 * 120.00058 * 189.56259 * 9 7 5 12 12 H 1.48497 * 109.47100 * 94.98363 * 11 9 7 13 13 H 1.48493 * 109.47154 * 214.99004 * 11 9 7 14 14 H 1.48508 * 109.46779 * 334.98908 * 11 9 7 15 15 C 1.53119 * 109.21577 * 302.31401 * 5 4 2 16 16 C 1.53173 * 109.20634 * 57.62485 * 15 5 4 17 17 N 1.46839 * 109.55639 * 300.86122 * 16 15 5 18 18 H 1.08994 * 109.47861 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47061 * 299.97274 * 1 2 3 20 20 H 1.08999 * 109.47298 * 59.96742 * 1 2 3 21 21 H 1.09001 * 109.50429 * 179.22574 * 4 2 1 22 22 H 1.08997 * 109.53528 * 59.12726 * 4 2 1 23 23 H 0.96996 * 120.00321 * 180.02562 * 10 9 7 24 24 H 1.08995 * 109.50266 * 177.62787 * 15 5 4 25 25 H 1.09002 * 109.50302 * 297.74474 * 15 5 4 26 26 H 1.08997 * 109.44485 * 180.83347 * 16 15 5 27 27 H 1.09007 * 109.43631 * 60.88270 * 16 15 5 28 28 H 1.00900 * 111.00042 * 185.83686 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 1.5441 -2.1696 -1.2356 6 1 0.4546 -2.1821 -1.2672 7 6 2.0912 -2.9010 -2.4344 8 1 2.7964 -2.4118 -3.0898 9 6 1.6913 -4.1946 -2.6942 10 7 0.6988 -4.7253 -2.0139 11 14 2.5594 -5.1936 -4.0125 12 1 3.6201 -6.0233 -3.3866 13 1 1.5771 -6.0759 -4.6921 14 1 3.1711 -4.2756 -5.0067 15 6 2.0268 -2.8546 0.0459 16 6 1.5173 -2.0705 1.2591 17 7 2.0192 -0.6919 1.1994 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5134 0.8902 20 1 -0.3634 0.5143 -0.8897 21 1 3.1297 -0.7093 -1.2577 22 1 1.6642 -0.2166 -2.1403 23 1 0.4177 -5.6356 -2.1965 24 1 1.6413 -3.8735 0.0812 25 1 3.1165 -2.8766 0.0586 26 1 1.8711 -2.5466 2.1735 27 1 0.4273 -2.0607 1.2530 28 1 1.7760 -0.1819 2.0354 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799169.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:25 Heat of formation + Delta-G solvation = -17.625644 kcal Electronic energy + Delta-G solvation = -10223.678632 eV Core-core repulsion = 8466.640170 eV Total energy + Delta-G solvation = -1757.038463 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.21748 -33.28071 -30.78204 -30.42575 -26.59637 -25.04081 -21.69611 -21.15637 -17.65176 -16.58077 -15.59137 -14.42851 -14.08730 -13.44032 -12.79048 -12.34927 -12.25311 -11.96906 -11.43954 -10.98880 -10.92757 -10.71413 -10.35495 -10.10377 -10.05237 -9.35159 -8.78300 -8.70046 -8.22462 -7.73509 -5.96432 -3.96737 3.34076 3.41121 3.44513 4.49324 4.90418 5.35782 5.60314 5.73496 5.90844 6.08769 6.14567 6.30281 6.46147 6.62332 6.66027 6.71366 6.93902 7.13108 7.22803 7.47464 7.64227 7.86073 8.01478 8.10517 8.12911 8.53514 9.07421 9.65973 11.12776 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.076314 B = 0.014527 C = 0.013924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.818382 B = 1926.955141 C = 2010.453965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.063 0.937 4 C -0.101 4.101 5 C 0.045 3.955 6 H 0.032 0.968 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.062 3.938 10 N -0.891 5.891 11 Si 0.885 3.115 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.275 1.275 15 C -0.100 4.100 16 C 0.053 3.947 17 N -0.684 5.684 18 H 0.070 0.930 19 H 0.038 0.962 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.259 0.741 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.025 0.975 28 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.132 5.635 4.236 7.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.027 4.027 3 H 0.081 0.919 4 C -0.139 4.139 5 C 0.027 3.973 6 H 0.050 0.950 7 C -0.551 4.551 8 H 0.072 0.928 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.714 3.286 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.139 4.139 16 C -0.075 4.075 17 N -0.313 5.313 18 H 0.089 0.911 19 H 0.057 0.943 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.631 5.279 3.951 6.623 hybrid contribution -0.543 -0.505 -0.424 0.854 sum 0.088 4.773 3.527 5.936 Atomic orbital electron populations 1.22550 0.98511 1.02899 1.00459 1.21589 0.92059 0.96721 0.92283 0.91874 1.21672 1.00091 0.98537 0.93611 1.18727 0.96563 0.89091 0.92924 0.94966 1.21221 1.25638 0.98279 1.09917 0.92804 1.24961 0.94633 0.98036 0.96251 1.69966 1.26028 1.14905 1.42074 0.86684 0.79631 0.80321 0.82005 1.20748 1.21411 1.19939 1.21611 0.99277 0.99562 0.93420 1.22123 0.96833 0.88791 0.99799 1.60542 1.63329 1.03452 1.03976 0.91090 0.94279 0.92667 0.92794 0.93299 0.93173 0.90957 0.93795 0.92925 0.95650 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.20 8.58 37.16 0.32 -2.88 15 2 C 0.08 1.53 3.68 -67.72 -0.25 1.28 15 3 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 4 C -0.10 -2.20 4.84 -26.65 -0.13 -2.33 15 5 C 0.05 1.15 1.72 -91.64 -0.16 0.99 15 6 H 0.03 0.89 6.50 -51.93 -0.34 0.55 15 7 C -0.51 -14.41 8.48 -34.44 -0.29 -14.70 15 8 H 0.05 1.51 7.77 -52.49 -0.41 1.10 15 9 C 0.06 1.76 5.22 -17.82 -0.09 1.67 15 10 N -0.89 -25.96 12.19 55.43 0.68 -25.29 15 11 Si 0.89 21.65 29.55 -169.99 -5.02 16.63 15 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 15 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 15 C -0.10 -2.41 5.20 -26.58 -0.14 -2.55 15 16 C 0.05 1.06 6.26 -3.77 -0.02 1.03 15 17 N -0.68 -12.40 6.65 -106.69 -0.71 -13.11 15 18 H 0.07 1.40 4.80 -51.93 -0.25 1.15 15 19 H 0.04 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 21 H 0.05 1.20 8.14 -51.93 -0.42 0.78 15 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 24 H 0.07 1.91 6.98 -51.93 -0.36 1.54 15 25 H 0.04 1.08 8.14 -51.93 -0.42 0.66 15 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 27 H 0.03 0.51 6.19 -51.92 -0.32 0.19 15 28 H 0.32 4.93 8.90 -39.29 -0.35 4.58 15 LS Contribution 220.14 15.07 3.32 3.32 Total: -1.00 -28.76 220.14 -6.63 -35.39 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.12 Total: 0.55 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -0.76 Total: -17.49 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: -0.03 Total: -38.39 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -28.76 -6.63 -35.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799169.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.764 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds