Wall clock time and date at job start Mon Mar 30 2020 02:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.45567 * 2 1 4 4 C 1.53038 * 109.45900 * 240.02646 * 2 1 3 5 5 C 1.53119 * 109.27714 * 299.16418 * 4 2 1 6 6 H 1.09001 * 109.52404 * 62.25543 * 5 4 2 7 7 C 1.50710 * 109.51992 * 182.37906 * 5 4 2 8 8 H 1.07993 * 119.99896 * 5.30737 * 7 5 4 9 9 C 1.37876 * 119.99793 * 185.31013 * 7 5 4 10 10 N 1.31515 * 120.00270 * 9.55440 * 9 7 5 11 11 Si 1.86799 * 120.00058 * 189.56259 * 9 7 5 12 12 H 1.48497 * 109.47100 * 94.98363 * 11 9 7 13 13 H 1.48493 * 109.47154 * 214.99004 * 11 9 7 14 14 H 1.48508 * 109.46779 * 334.98908 * 11 9 7 15 15 C 1.53119 * 109.21577 * 302.31401 * 5 4 2 16 16 C 1.53173 * 109.20634 * 57.62485 * 15 5 4 17 17 N 1.46839 * 109.55639 * 300.86122 * 16 15 5 18 18 H 1.08994 * 109.47861 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47061 * 299.97274 * 1 2 3 20 20 H 1.08999 * 109.47298 * 59.96742 * 1 2 3 21 21 H 1.09001 * 109.50429 * 179.22574 * 4 2 1 22 22 H 1.08997 * 109.53528 * 59.12726 * 4 2 1 23 23 H 0.96996 * 120.00321 * 180.02562 * 10 9 7 24 24 H 1.08995 * 109.50266 * 177.62787 * 15 5 4 25 25 H 1.09002 * 109.50302 * 297.74474 * 15 5 4 26 26 H 1.08997 * 109.44485 * 180.83347 * 16 15 5 27 27 H 1.09007 * 109.43631 * 60.88270 * 16 15 5 28 28 H 1.00900 * 111.00042 * 185.83686 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 1.5441 -2.1696 -1.2356 6 1 0.4546 -2.1821 -1.2672 7 6 2.0912 -2.9010 -2.4344 8 1 2.7964 -2.4118 -3.0898 9 6 1.6913 -4.1946 -2.6942 10 7 0.6988 -4.7253 -2.0139 11 14 2.5594 -5.1936 -4.0125 12 1 3.6201 -6.0233 -3.3866 13 1 1.5771 -6.0759 -4.6921 14 1 3.1711 -4.2756 -5.0067 15 6 2.0268 -2.8546 0.0459 16 6 1.5173 -2.0705 1.2591 17 7 2.0192 -0.6919 1.1994 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5134 0.8902 20 1 -0.3634 0.5143 -0.8897 21 1 3.1297 -0.7093 -1.2577 22 1 1.6642 -0.2166 -2.1403 23 1 0.4177 -5.6356 -2.1965 24 1 1.6413 -3.8735 0.0812 25 1 3.1165 -2.8766 0.0586 26 1 1.8711 -2.5466 2.1735 27 1 0.4273 -2.0607 1.2530 28 1 1.7760 -0.1819 2.0354 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799169.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:25 Heat of formation + Delta-G solvation = -37.150012 kcal Electronic energy + Delta-G solvation = -10224.525273 eV Core-core repulsion = 8466.640170 eV Total energy + Delta-G solvation = -1757.885103 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.86857 -35.28594 -32.41148 -32.35265 -28.17845 -27.04270 -23.44375 -22.96035 -19.36363 -18.57321 -17.35062 -16.40301 -15.65995 -15.17335 -14.39605 -14.28764 -14.02334 -13.55829 -13.07856 -12.91588 -12.77415 -12.41281 -12.18178 -12.08702 -11.74282 -11.28670 -10.65903 -10.64434 -10.34355 -9.22276 -8.12369 -6.20082 1.39082 1.40789 1.50717 2.43498 3.17316 3.45075 4.14060 4.25020 4.44531 4.45664 4.56097 4.76972 4.92037 4.95978 4.99237 5.07539 5.25518 5.34691 5.40824 5.57171 5.63851 5.96469 6.05262 6.28178 6.41570 6.74259 6.93253 7.46050 8.95901 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.076314 B = 0.014527 C = 0.013924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.818382 B = 1926.955141 C = 2010.453965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.086 3.914 3 H 0.094 0.906 4 C -0.098 4.098 5 C 0.043 3.957 6 H 0.004 0.996 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.014 3.986 10 N -0.919 5.919 11 Si 0.949 3.051 12 H -0.276 1.276 13 H -0.283 1.283 14 H -0.269 1.269 15 C -0.094 4.094 16 C 0.064 3.936 17 N -0.683 5.683 18 H 0.040 0.960 19 H 0.068 0.932 20 H 0.059 0.941 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.260 0.740 24 H 0.040 0.960 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.024 0.976 28 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 6.661 4.752 8.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.023 4.023 3 H 0.112 0.888 4 C -0.136 4.136 5 C 0.024 3.976 6 H 0.022 0.978 7 C -0.575 4.575 8 H 0.066 0.934 9 C -0.185 4.185 10 N -0.558 5.558 11 Si 0.774 3.226 12 H -0.202 1.202 13 H -0.209 1.209 14 H -0.193 1.193 15 C -0.133 4.133 16 C -0.066 4.066 17 N -0.315 5.315 18 H 0.059 0.941 19 H 0.087 0.913 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.042 0.958 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.036 6.325 4.479 7.819 hybrid contribution -0.675 -0.808 -0.593 1.208 sum 0.361 5.517 3.886 6.758 Atomic orbital electron populations 1.22462 0.97657 1.01411 1.02244 1.21566 0.92683 0.97532 0.90550 0.88767 1.21576 0.99447 0.96617 0.95946 1.18681 0.94711 0.91467 0.92700 0.97802 1.21619 1.25723 0.99104 1.11014 0.93414 1.25720 0.95181 0.99055 0.98515 1.70080 1.27073 1.15172 1.43490 0.85689 0.78587 0.78791 0.79502 1.20197 1.20858 1.19304 1.21419 0.98198 0.98560 0.95107 1.21906 0.96605 0.89648 0.98400 1.60420 1.63288 1.02699 1.05079 0.94143 0.91257 0.92158 0.93651 0.93279 0.93098 0.94127 0.95029 0.90815 0.95834 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.77 8.58 71.98 0.62 -5.15 15 2 C 0.09 2.94 3.68 44.94 0.17 3.10 15 3 H 0.09 2.71 8.14 -2.39 -0.02 2.69 15 4 C -0.10 -4.19 4.84 30.65 0.15 -4.05 15 5 C 0.04 2.21 1.72 -11.46 -0.02 2.19 15 6 H 0.00 0.22 6.50 -2.39 -0.02 0.20 15 7 C -0.54 -30.71 8.48 25.60 0.22 -30.50 15 8 H 0.05 2.71 7.77 -2.91 -0.02 2.69 15 9 C 0.01 0.79 5.22 84.65 0.44 1.23 15 10 N -0.92 -54.64 12.19 21.45 0.26 -54.38 15 11 Si 0.95 44.78 29.55 68.60 2.03 46.80 15 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 15 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 15 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 15 C -0.09 -4.59 5.20 30.69 0.16 -4.43 15 16 C 0.06 2.44 6.26 86.37 0.54 2.98 15 17 N -0.68 -22.84 6.65 -491.44 -3.27 -26.11 15 18 H 0.04 1.55 4.80 -2.39 -0.01 1.54 15 19 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 20 H 0.06 1.86 8.14 -2.39 -0.02 1.84 15 21 H 0.04 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.05 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.26 14.68 8.31 -92.71 -0.77 13.91 15 24 H 0.04 2.19 6.98 -2.39 -0.02 2.18 15 25 H 0.03 1.56 8.14 -2.39 -0.02 1.54 15 26 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 27 H 0.02 0.92 6.19 -2.38 -0.01 0.90 15 28 H 0.35 9.18 8.90 -89.69 -0.80 8.38 15 Total: -1.00 -61.74 220.14 1.63 -60.11 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.34 Total: 8.18 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 2.27 Total: -34.62 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -3.01 Total: -80.48 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -61.74 1.63 -60.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799169.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.965 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds