Wall clock time and date at job start Mon Mar 30 2020 01:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99818 * 2 1 4 4 H 1.48497 * 109.47042 * 269.99486 * 3 2 1 5 5 H 1.48494 * 109.47306 * 29.99903 * 3 2 1 6 6 H 1.48504 * 109.47158 * 150.00156 * 3 2 1 7 7 C 1.37879 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00095 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99838 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46824 * 181.22018 * 9 7 2 11 11 C 1.52999 * 115.54686 * 294.71371 * 10 9 7 12 12 C 1.53003 * 109.47541 * 279.53664 * 11 10 9 13 13 N 1.46901 * 109.47351 * 175.05986 * 12 11 10 14 14 C 1.52995 * 117.52219 * 80.42066 * 10 9 7 15 15 C 1.52995 * 117.49877 * 149.05186 * 10 9 7 16 16 H 0.96989 * 120.00082 * 0.02562 * 1 2 3 17 17 H 1.08995 * 109.47747 * 61.21490 * 9 7 2 18 18 H 1.09003 * 109.46934 * 301.21014 * 9 7 2 19 19 H 1.08996 * 109.47047 * 159.53368 * 11 10 9 20 20 H 1.09004 * 109.46849 * 39.53391 * 11 10 9 21 21 H 1.09004 * 109.47333 * 55.05487 * 12 11 10 22 22 H 1.09008 * 109.46773 * 295.06093 * 12 11 10 23 23 H 1.00900 * 110.99915 * 180.02562 * 13 12 11 24 24 H 1.00898 * 110.99804 * 303.94875 * 13 12 11 25 25 H 1.09004 * 117.49711 * 214.97028 * 14 10 9 26 26 H 1.08998 * 117.49957 * 359.97438 * 14 10 9 27 27 H 1.09006 * 117.50292 * 359.97058 * 15 10 9 28 28 H 1.09005 * 117.49860 * 144.99478 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6362 -0.0314 11 6 3.6969 -3.4780 1.2042 12 6 4.6943 -3.1542 2.3184 13 7 4.3125 -3.8730 3.5414 14 6 4.0449 -3.3484 -1.3853 15 6 5.3547 -2.8989 -0.7348 16 1 -0.4850 0.8399 -0.0004 17 1 3.8746 -0.6998 0.9011 18 1 3.8752 -0.6608 -0.8784 19 1 3.7655 -4.5360 0.9513 20 1 2.6864 -3.2503 1.5437 21 1 4.6886 -2.0813 2.5107 22 1 5.6938 -3.4632 2.0124 23 1 4.9562 -3.6752 4.2929 24 1 3.3652 -3.6523 3.8097 25 1 3.8289 -4.4168 -1.3957 26 1 3.6964 -2.7898 -2.2539 27 1 5.8682 -2.0443 -1.1755 28 1 6.0004 -3.6715 -0.3172 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259879300.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:41 Heat of formation + Delta-G solvation = -15.943036 kcal Electronic energy + Delta-G solvation = -9817.015746 eV Core-core repulsion = 8060.050247 eV Total energy + Delta-G solvation = -1756.965500 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.41721 -35.46150 -34.76341 -31.00371 -29.42034 -24.85398 -23.78577 -22.62654 -19.57671 -18.82945 -17.03387 -16.21425 -16.16730 -15.73659 -14.83253 -14.55244 -14.22545 -13.82682 -13.15766 -12.87572 -12.46631 -12.34060 -12.11032 -11.98001 -11.71070 -11.33203 -10.84465 -10.69993 -10.22451 -9.59016 -8.26906 -6.28586 1.33590 1.34841 1.46465 2.35496 3.04202 3.09422 3.65386 4.07300 4.11189 4.22290 4.31483 4.59079 4.67735 4.82539 4.88002 5.08215 5.11175 5.16619 5.39082 5.42269 5.49253 5.59529 5.69388 6.21893 6.34816 6.62878 6.78299 7.34222 8.89964 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.042518 B = 0.015258 C = 0.013632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.389348 B = 1834.611680 C = 2053.524295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.510 4.510 8 H 0.033 0.967 9 C 0.026 3.974 10 C -0.117 4.117 11 C -0.066 4.066 12 C 0.073 3.927 13 N -0.855 5.855 14 C -0.179 4.179 15 C -0.162 4.162 16 H 0.264 0.736 17 H 0.018 0.982 18 H 0.013 0.987 19 H 0.064 0.936 20 H 0.043 0.957 21 H 0.016 0.984 22 H 0.081 0.919 23 H 0.350 0.650 24 H 0.341 0.659 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.390 -3.580 2.733 12.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.548 4.548 8 H 0.052 0.948 9 C -0.011 4.011 10 C -0.118 4.118 11 C -0.104 4.104 12 C -0.057 4.057 13 N -0.385 5.385 14 C -0.216 4.216 15 C -0.199 4.199 16 H 0.073 0.927 17 H 0.036 0.964 18 H 0.031 0.969 19 H 0.082 0.918 20 H 0.061 0.939 21 H 0.035 0.965 22 H 0.100 0.900 23 H 0.163 0.837 24 H 0.153 0.847 25 H 0.115 0.885 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.382 -4.135 2.307 12.328 hybrid contribution -0.577 1.784 0.244 1.891 sum 10.805 -2.352 2.551 11.348 Atomic orbital electron populations 1.70064 1.08170 1.27882 1.53301 1.25963 0.95556 1.03213 0.94691 0.85734 0.79484 0.78816 0.79077 1.19377 1.21054 1.17269 1.21320 0.91609 0.92810 1.49027 0.94832 1.19058 0.93979 0.92234 0.95872 1.21338 1.00515 0.96427 0.93528 1.20881 0.98507 0.97815 0.93235 1.21639 0.98941 0.94958 0.90206 1.58783 1.08095 1.64249 1.07385 1.22937 1.02116 1.00162 0.96351 1.23088 0.90026 1.03321 1.03485 0.92689 0.96417 0.96855 0.91773 0.93870 0.96529 0.90049 0.83732 0.84662 0.88526 0.90463 0.88858 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.36 13.96 21.45 0.30 -60.06 15 2 C 0.00 0.11 5.47 84.66 0.46 0.57 15 3 Si 0.94 44.75 27.44 68.60 1.88 46.63 15 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 5 H -0.28 -13.23 7.11 99.48 0.71 -12.53 15 6 H -0.25 -10.98 6.58 99.48 0.65 -10.32 15 7 C -0.51 -29.44 9.03 25.60 0.23 -29.21 15 8 H 0.03 2.15 7.68 -2.91 -0.02 2.13 15 9 C 0.03 1.22 3.92 29.85 0.12 1.34 15 10 C -0.12 -4.59 1.44 -52.18 -0.07 -4.66 15 11 C -0.07 -2.44 5.36 30.60 0.16 -2.28 15 12 C 0.07 2.25 6.62 86.30 0.57 2.82 15 13 N -0.86 -22.98 9.62 -186.70 -1.80 -24.78 15 14 C -0.18 -6.37 9.90 30.59 0.30 -6.06 15 15 C -0.16 -5.00 9.58 30.59 0.29 -4.71 15 16 H 0.26 15.65 8.31 -92.72 -0.77 14.88 15 17 H 0.02 0.83 6.80 -2.39 -0.02 0.82 15 18 H 0.01 0.62 7.45 -2.39 -0.02 0.60 15 19 H 0.06 2.19 7.94 -2.39 -0.02 2.18 15 20 H 0.04 1.86 7.24 -2.38 -0.02 1.85 15 21 H 0.02 0.55 7.66 -2.39 -0.02 0.53 15 22 H 0.08 2.21 7.83 -2.38 -0.02 2.19 15 23 H 0.35 7.49 9.08 -89.69 -0.81 6.67 15 24 H 0.34 9.34 8.99 -89.70 -0.81 8.53 15 25 H 0.10 3.12 8.08 -2.39 -0.02 3.10 15 26 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 27 H 0.09 2.73 8.14 -2.38 -0.02 2.71 15 28 H 0.11 2.81 8.00 -2.38 -0.02 2.79 15 Total: -1.00 -64.84 234.48 1.92 -62.91 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -0.53 Total: 17.48 kcal Atomic # 6 Polarization: -44.26 SS G_CDS: 2.07 Total: -42.19 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -1.50 Total: -84.84 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -64.84 1.92 -62.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879300.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.970 kcal (2) G-P(sol) polarization free energy of solvation -64.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds