Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.36686 * 2 1 4 4 C 1.54251 * 110.32450 * 237.81530 * 2 1 3 5 5 C 1.54375 * 105.06180 * 241.10365 * 4 2 1 6 6 N 1.48561 * 104.59370 * 336.14820 * 5 4 2 7 7 C 1.48562 * 104.22091 * 39.48254 * 6 5 4 8 8 H 1.08997 * 110.40861 * 79.41807 * 7 6 5 9 9 C 1.52996 * 110.40977 * 201.73760 * 7 6 5 10 10 C 1.50702 * 109.47159 * 293.54498 * 9 7 6 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 7 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 H 1.09000 * 109.47585 * 297.82166 * 1 2 3 19 19 H 1.08999 * 109.47377 * 57.82326 * 1 2 3 20 20 H 1.09003 * 109.46940 * 177.82228 * 1 2 3 21 21 H 1.09004 * 110.32574 * 122.20721 * 4 2 1 22 22 H 1.08997 * 110.41186 * 0.04642 * 4 2 1 23 23 H 1.09006 * 110.41430 * 217.37028 * 5 4 2 24 24 H 1.08997 * 110.51409 * 94.97367 * 5 4 2 25 25 H 1.00902 * 111.00342 * 159.03946 * 6 5 4 26 26 H 1.09004 * 109.47066 * 173.54701 * 9 7 6 27 27 H 1.08994 * 109.47405 * 53.54531 * 9 7 6 28 28 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0658 -0.7705 -1.2242 5 6 2.8806 -1.9421 -0.6356 6 7 3.2693 -1.4827 0.7226 7 6 2.0661 -0.7709 1.2253 8 1 1.3237 -1.4846 1.5824 9 6 2.4495 0.2021 2.3421 10 6 2.9319 -0.5737 3.5407 11 1 2.9623 -1.6528 3.5089 12 6 3.3402 0.0944 4.6756 13 7 3.3035 1.4085 4.7141 14 14 3.9453 -0.8670 6.1584 15 1 5.1289 -1.6772 5.7738 16 1 4.3220 0.0776 7.2406 17 1 2.8656 -1.7657 6.6401 18 1 -0.3634 0.4796 0.9088 19 1 -0.3634 0.5472 -0.8698 20 1 -0.3633 -1.0270 -0.0391 21 1 2.7082 -0.1268 -1.8252 22 1 1.2399 -1.1486 -1.8266 23 1 3.7671 -2.1308 -1.2413 24 1 2.2665 -2.8404 -0.5718 25 1 3.5011 -2.2649 1.3164 26 1 1.5795 0.7969 2.6204 27 1 3.2438 0.8616 1.9926 28 1 3.5904 1.8785 5.5127 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259946398.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = -18.943030 kcal Electronic energy + Delta-G solvation = -9900.968531 eV Core-core repulsion = 8143.872942 eV Total energy + Delta-G solvation = -1757.095589 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.22059 -32.98188 -31.52504 -30.12057 -26.80786 -24.75142 -22.24428 -20.22917 -18.95666 -16.20179 -15.44103 -14.95175 -14.20674 -13.72103 -12.72336 -12.57258 -12.17975 -11.89027 -11.34086 -11.14610 -11.02960 -10.87694 -10.40047 -10.33468 -10.22710 -9.87376 -9.29906 -8.89648 -8.28372 -7.71367 -5.91678 -3.92466 3.37727 3.41971 3.44271 4.52078 4.96533 5.24254 5.27611 5.43721 5.56287 5.70869 5.89491 5.99532 6.05604 6.25231 6.32101 6.43038 6.49288 6.55248 6.87923 7.05879 7.47081 7.73271 7.92550 8.06022 8.24229 8.51046 9.11822 9.69604 11.19796 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.070235 B = 0.012618 C = 0.011497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.565917 B = 2218.450276 C = 2434.796220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.119 4.119 5 C 0.031 3.969 6 N -0.651 5.651 7 C 0.080 3.920 8 H 0.034 0.966 9 C 0.036 3.964 10 C -0.510 4.510 11 H 0.050 0.950 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.279 1.279 18 H 0.058 0.942 19 H 0.047 0.953 20 H 0.047 0.953 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.026 0.974 25 H 0.335 0.665 26 H 0.017 0.983 27 H 0.025 0.975 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 -4.410 -8.402 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.095 0.905 4 C -0.157 4.157 5 C -0.099 4.099 6 N -0.280 5.280 7 C -0.030 4.030 8 H 0.052 0.948 9 C -0.001 4.001 10 C -0.548 4.548 11 H 0.068 0.932 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.205 1.205 18 H 0.077 0.923 19 H 0.066 0.934 20 H 0.066 0.934 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.045 0.955 25 H 0.151 0.849 26 H 0.036 0.964 27 H 0.044 0.956 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.877 -3.664 -8.473 9.670 hybrid contribution -0.254 -1.265 1.081 1.684 sum -3.132 -4.929 -7.392 9.421 Atomic orbital electron populations 1.21818 0.95579 1.00916 1.01381 1.21982 0.94733 1.00283 0.94750 0.90531 1.22356 0.98679 0.97127 0.97545 1.22879 0.97903 0.95720 0.93358 1.63678 1.35112 1.27340 1.01890 1.22721 0.89629 0.95943 0.94671 0.94820 1.19072 0.96648 0.93598 0.90808 1.21109 1.42664 0.92692 0.98343 0.93224 1.24989 0.96014 0.94821 0.98645 1.69953 1.48338 1.06614 1.28742 0.86693 0.79227 0.79720 0.82516 1.20290 1.21387 1.20480 0.92254 0.93371 0.93406 0.91827 0.92286 0.91354 0.95527 0.84908 0.96434 0.95625 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.91 37.16 0.33 -1.83 15 2 C -0.10 -1.77 3.21 -89.24 -0.29 -2.06 15 3 H 0.08 1.47 7.86 -51.93 -0.41 1.06 15 4 C -0.12 -1.84 6.64 -25.36 -0.17 -2.01 15 5 C 0.03 0.51 7.47 -2.18 -0.02 0.49 15 6 N -0.65 -13.18 7.10 -102.75 -0.73 -13.91 15 7 C 0.08 1.71 2.64 -66.07 -0.17 1.53 15 8 H 0.03 0.73 7.87 -51.93 -0.41 0.32 15 9 C 0.04 0.96 4.58 -27.88 -0.13 0.83 15 10 C -0.51 -14.57 8.85 -34.44 -0.30 -14.87 15 11 H 0.05 1.37 7.52 -52.49 -0.39 0.97 15 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 13 N -0.90 -27.45 13.29 55.43 0.74 -26.72 15 14 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 15 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 18 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 19 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 20 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.06 0.79 7.71 -51.93 -0.40 0.39 15 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 15 25 H 0.34 6.68 8.62 -39.29 -0.34 6.34 15 26 H 0.02 0.49 8.14 -51.93 -0.42 0.06 15 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 LS Contribution 232.01 15.07 3.50 3.50 Total: -1.00 -30.28 232.01 -6.83 -37.11 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.47 Total: -0.60 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -0.84 Total: -16.38 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.01 Total: -40.63 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.28 -6.83 -37.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259946398.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.167 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds